Browse Element(s) Details


Os.40338.1.S1_at

Description gb:CF336021
DB_XREF= gi:33820420
DB_XREF=JMT--05-O20.g1
CLONE=JMT--05-O20
TID=Os.40338.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.40338 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g593401/11D-hydantoinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59280OsAffx.31780.2.S1_at8/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.2.S1_s_at8/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.2.S1_x_at5/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.38172.1.S1_x_at3/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.43567.1.S1_x_at3/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.29987.1.S1_at2/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.1.S1_at1/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59290OsAffx.23853.1.S1_at11/111+34601599..34602147hypothetical protein
LOC_Os01g59300OsAffx.11658.1.S1_at10/111+34604010..34607660hypothetical protein
LOC_Os01g59310NANA1+34609413..34609757hypothetical protein
LOC_Os01g59320Os.33610.4.S1_x_at11/111+34619926..34622423expressed protein
LOC_Os01g59320Os.33610.2.A1_at11/111+34619926..34622423expressed protein
LOC_Os01g59340Os.33610.3.S1_x_at11/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59340Os.33610.3.S1_s_at11/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59340Os.40338.1.S1_at1/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59350Os.35049.1.S1_a_at10/111+34633377..34640164Transcription factor HBP-1b, putative, expressed
LOC_Os01g59360Os.42230.1.S1_at10/111+34652159..34654737Calcium-dependent protein kinase, isoform 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010136biological_processureide catabolism
GO:0004038molecular_functionallantoinase activity
GO:0004157molecular_functiondihydropyrimidinase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40338.1.S1_at--919--3651Chr07:2661682..2661706 (25 bp)
CTTCAGAATCTGCATGATCCAGTGT
NONE
Os.40338.1.S1_at--675--3051Chr07:2661676..2661700 (25 bp)
AATCTGCATGATCCAGTGTGTGTTT
NONE
Os.40338.1.S1_at--757--7431Chr07:2661657..2661681 (25 bp)
GTGTTTGTGTGTGCTGGAACAGCAC
NONE
Os.40338.1.S1_at--897--4711Chr07:2661645..2661669 (25 bp)
GCTGGAACAGCACTAGCTAGCTTAA
NONE
Os.40338.1.S1_at--883--6232Chr01:34630028..34630418 (25 bp)
GATGGAATGAACATGATGCTTTGGT
LOC_Os01g59340
Os.40338.1.S1_at--1079--6331Chr07:2661599..2661623 (25 bp)
GATGCTTTGGTGGTATATTGCACAT
NONE
Os.40338.1.S1_at--129--8631Chr07:2661592..2661616 (25 bp)
TGGTGGTATATTGCACATATGTACA
NONE
Os.40338.1.S1_at--691--2911Chr07:2661560..2661584 (25 bp)
AAGGATGTGCTTGTACTGTGTAAAT
NONE
Os.40338.1.S1_at--243--8751Chr07:2661549..2661573 (25 bp)
TGTACTGTGTAAATTGATCTAGCAA
NONE
Os.40338.1.S1_at--443--3171Chr07:2661538..2661562 (25 bp)
AATTGATCTAGCAAATTTGTGCATG
NONE
Os.40338.1.S1_at--562--5131Chr07:2661528..2661552 (25 bp)
GCAAATTTGTGCATGATGTCATATA
NONE
Target Sequence 
CTTCAGAATCTGCATGATCCAGTGTGTGTTTGTGTGTGCTGGAACAGCACTAGCTAGCTTAATTAGAGTGATGGAATGAA
CATGATGCTTTGGTGGTATATTGCACATATGTACAAAGGAATAAGGATGTGCTTGTACTGTGTAAATTGATCTAGCAAAT
TTGTGCATGATGTCATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis