Browse Element(s) Details


Os.33610.4.S1_x_at

Description gb:NM_191010.1
DB_XREF= gi:34909103
GEN=P0702B09.9
TID=Os.33610.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33610 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative dihydropyrimidinase (P0702B09.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0702B09.9 (P0702B09.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5932011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59280OsAffx.31780.2.S1_at8/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.2.S1_s_at8/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.2.S1_x_at5/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.38172.1.S1_x_at3/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.43567.1.S1_x_at3/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.29987.1.S1_at2/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.1.S1_at1/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59290OsAffx.23853.1.S1_at11/111+34601599..34602147hypothetical protein
LOC_Os01g59300OsAffx.11658.1.S1_at10/111+34604010..34607660hypothetical protein
LOC_Os01g59310NANA1+34609413..34609757hypothetical protein
LOC_Os01g59320Os.33610.4.S1_x_at11/111+34619926..34622423expressed protein
LOC_Os01g59320Os.33610.2.A1_at11/111+34619926..34622423expressed protein
LOC_Os01g59340Os.33610.3.S1_x_at11/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59340Os.33610.3.S1_s_at11/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59340Os.40338.1.S1_at1/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59350Os.35049.1.S1_a_at10/111+34633377..34640164Transcription factor HBP-1b, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33610.4.S1_x_at--526--6271Chr01:34621626..34621645 (20 bp)
GATGTCGGCGATGCTGTGTACAAAA
LOC_Os01g59320
Os.33610.4.S1_x_at--554--5051Chr01:34620796..34620820 (25 bp)
GCAGAAGTTGAGTTTGTCCACTATA
LOC_Os01g59320
Os.33610.4.S1_x_at--556--6271Chr01:34620764..34620788 (25 bp)
GATGTCTCATAGATGCAGCACTACT
LOC_Os01g59320
Os.33610.4.S1_x_at--536--5111Chr01:34620747..34620771 (25 bp)
GCACTACTGCTGTTTGAGATGGCCA
LOC_Os01g59320
Os.33610.4.S1_x_at--541--10151Chr01:34620683..34620707 (25 bp)
TATCCCTGGGAAAGTTGGCTAGAAT
LOC_Os01g59320
Os.33610.4.S1_x_at--26--4871Chr01:34620666..34620690 (25 bp)
GCTAGAATTTCTATCCTCACGGAGT
LOC_Os01g59320
Os.33610.4.S1_x_at--506--7851Chr01:34620457..34620481 (25 bp)
GGTACCATGCTCATTTAGTTCAACG
LOC_Os01g59320
Os.33610.4.S1_x_at--148--10051Chr01:34620442..34620466 (25 bp)
TAGTTCAACGGCTGTTCTTCCGACA
LOC_Os01g59320
Os.33610.4.S1_x_at--792--6731Chr01:34620429..34620453 (25 bp)
GTTCTTCCGACACTTGATGTCATCG
LOC_Os01g59320
Os.33610.4.S1_x_at--805--5571Chr01:34620342..34620366 (25 bp)
GAAAGGGCTGGCTATCATTCTCATC
LOC_Os01g59320
Os.33610.4.S1_x_at--1160--631Chr01:34620295..34620319 (25 bp)
ATGCATTCCGGCAATATCTGAACGT
LOC_Os01g59320
Target Sequence 
GATGTCGGCGATGCTGTGTACAAAACTTCTGCAGAAGTTGAGTTTGTCCACTATAGGTGAAAGATGTCTCATAGATGCAG
CACTACTGCTGTTTGAGATGGCCAGCAATAATGTGAAAGAGAAACTGAGGAAGCTTCTTATGTTATCCCTGGGAAAGTTG
GCTAGAATTTCTATCCTCACGGAGTCCTCCAAAGAAATAGAATCAGCTGACAGGGCAACAGAGAAGCTGGAAATGTTCAA
GTCACAGTTGAAACAGAAGGATGTATGTTTGGCAGAAAATGGCAACGGGGGATCATTGAACACAATCTTGTTGGAGAAAC
GTAGCAGATGGTCTATAACAAAGTCTTGGACCCCCTGTGCGATAGGAATGGTACCATGCTCATTTAGTTCAACGGCTGTT
CTTCCGACACTTGATGTCATCGATCATGAATTGAAAGATGACACATTGGAGCAACATGTAAATTTTGAGCTTGATGACCA
TACTGAAAGGGCTGGCTATCATTCTCATCCTGAGAAGCAATTGGATGTTGAATGCATTCCGGCAATATCTGAACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33610.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis