Browse Element(s) Details


Os.423.1.S1_a_at

Description gb:AB041725.1
DB_XREF= gi:12225042
GEN=OsE2F1
TID=Os.423.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.423 (NCBI UniGene Cluster)
DEF=Oryza sativa OsE2F1 mRNA for E2F homolog, complete cds.
PROD=E2F homolog
FL= gb:AB041725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3343011/11E2F protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33400Os.5865.1.S1_at11/112+19836322..19839251F-box domain containing protein, expressed
LOC_Os02g33410OsAffx.2840.1.S1_at11/112+19842261..19843365hypothetical protein
LOC_Os02g33420Os.24851.1.S1_at11/112+19854206..19858642ATPase, AAA family protein, expressed
LOC_Os02g33430Os.423.1.S1_a_at11/112+19862332..19867439E2F protein, putative, expressed
LOC_Os02g33440NANA2+19872435..19872855hypothetical protein
LOC_Os02g33450OsAffx.2841.1.S1_at9/112+19876213..198798822-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os02g33450Os.12196.1.S1_at9/112+19876213..198798822-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os02g33460NANA2+19889442..19892996transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0051302biological_processregulation of cell division
GO:0005667cellular_componenttranscription factor complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.423.1.S1_a_at--411--7551Chr02:19863004..19863028 (25 bp)
GGGCCACAGATGCAGGTCTCAGACA
LOC_Os02g33430
Os.423.1.S1_a_at--1130--7151Chr02:19862989..19863013 (25 bp)
GTCTCAGACATGCATAAACCCTAGG
LOC_Os02g33430
Os.423.1.S1_a_at--955--8951Chr02:19862937..19862961 (25 bp)
TGACATCTGGAATTCCTGGAGCGGT
LOC_Os02g33430
Os.423.1.S1_a_at--256--9831Chr02:19862862..19862886 (25 bp)
TAAAGAGCCGGGTGGTCTTCATCAG
LOC_Os02g33430
Os.423.1.S1_a_at--101--5991Chr02:19862820..19862844 (25 bp)
GAGACACCAAGTCCGTGCGAGAGAT
LOC_Os02g33430
Os.423.1.S1_a_at--646--891Chr02:19862759..19862783 (25 bp)
AGGCTGGTGGCGTCAACTAACTTAC
LOC_Os02g33430
Os.423.1.S1_a_at--708--431Chr02:19862691..19862715 (25 bp)
ATCTTGCTGCTGCTTTCGCTGTGAA
LOC_Os02g33430
Os.423.1.S1_a_at--7--5551Chr02:19862598..19862622 (25 bp)
GAAACGGTGGGCTTTGCTGTGCTCT
LOC_Os02g33430
Os.423.1.S1_a_at--472--9131Chr02:19862584..19862608 (25 bp)
TGCTGTGCTCTGTCGAGTATTCTTT
LOC_Os02g33430
Os.423.1.S1_a_at--1093--9771Chr02:19862533..19862557 (25 bp)
TAAGGGCATGCAGGGCTCGAGTTAT
LOC_Os02g33430
Os.423.1.S1_a_at--77--7031Chr02:19862474..19862498 (25 bp)
GTAACCGAGCCGTCTTTGTAAATTG
LOC_Os02g33430
Target Sequence 
GGGCCACAGATGCAGGTCTCAGACATGCATAAACCCTAGGATCACAGGGGTTACAGAAGTGAAAAGATGACATCTGGAAT
TCCTGGAGCGGTGTTTGTAGTGAAAAGTGAAAGCATGACAGCAAATGCTCATTGCCAAATTGTAAAGAGCCGGGTGGTCT
TCATCAGAATATCTGCATCTTCTCGAGACACCAAGTCCGTGCGAGAGATCAGGATGACACCATTCCGGATTCACATCTGC
TGTGGAGGCTGGTGGCGTCAACTAACTTACCAGCCTGCTGTTTCAGCACCCTGCTTCAGTCGAACGGGAGTAAATCTTGC
TGCTGCTTTCGCTGTGAAGCCTGCTGCGGTGCTCATTAAGGCACTGATATATTTTTTGCATTCAAAACTAACTAGTCATC
AGCAAGGAAACGGTGGGCTTTGCTGTGCTCTGTCGAGTATTCTTTGAAAATTCTTTGTACATTGGGAGGTATAAGGGCAT
GCAGGGCTCGAGTTATTGGTTTGACGGGAGCAATGAGCTGAGTTAATGATGTAACCGAGCCGTCTTTGTAAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.423.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis