Browse Element(s) Details


Os.42406.1.S1_at

Description gb:AK111988.1
DB_XREF= gi:37988651
TID=Os.42406.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.42406 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0529E05.19 (P0529E05.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-C10, full insert sequence.
FL= gb:AK111988.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6346011/11myb family transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63420Os.11384.1.S1_at11/111+37073656..37077825Coronatine-insensitive protein 1, putative, expressed
LOC_Os01g63430OsAffx.11713.3.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430OsAffx.11713.1.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430Os.10263.1.S1_at10/111+37077786..37080821hypothetical protein
LOC_Os01g63444Os.30588.4.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.4.S1_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.1.S1_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.5.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.2.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.3.S1_x_at10/111+37083746..37089766expressed protein
LOC_Os01g63460Os.42406.1.S1_at11/111+37090476..37092143myb family transcription factor, putative, expressed
LOC_Os01g63470Os.17214.1.S1_at11/111+37097867..37099284C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42406.1.S1_at--971--4411Chr01:37091059..37091083 (25 bp)
GCCATCCTCCTGCAGATGCAATGCG
LOC_Os01g63460
Os.42406.1.S1_at--854--2871Chr01:37090839..37090863 (25 bp)
AAGGGCATCAGTCCATCATCAGAGA
LOC_Os01g63460
Os.42406.1.S1_at--57--6031Chr01:37090818..37090842 (25 bp)
GAGAGTGGCACAGCGTTCAGCGTAC
LOC_Os01g63460
Os.42406.1.S1_at--687--831Chr01:37090766..37090790 (25 bp)
ATGGAGAGCCACGAGACGCCATCGG
LOC_Os01g63460
Os.42406.1.S1_at--1040--8391Chr01:37090743..37090767 (25 bp)
GGCGCGCAACTCCAGTGTACATAGA
LOC_Os01g63460
Os.42406.1.S1_at--324--2711Chr01:37090692..37090716 (25 bp)
AAGCATTTGATGAAGCCTGTGTGTT
LOC_Os01g63460
Os.42406.1.S1_at--918--8671Chr01:37090673..37090697 (25 bp)
TGTGTTGTTTTCCAGCCACTAACCG
LOC_Os01g63460
Os.42406.1.S1_at--1025--8151Chr01:37090632..37090656 (25 bp)
GGAACACCAGGTCAGATTATAGCTA
LOC_Os01g63460
Os.42406.1.S1_at--606--9811Chr01:37090607..37090631 (25 bp)
TAACGGTTTTCTGATGTGCTGATGT
LOC_Os01g63460
Os.42406.1.S1_at--566--5031Chr01:37090573..37090597 (25 bp)
GCAGTTGTAGTGTACTAGTGCCCCT
LOC_Os01g63460
Os.42406.1.S1_at--645--10031Chr01:37090558..37090582 (25 bp)
TAGTGCCCCTGTTTGGTAGTACTGG
LOC_Os01g63460
Target Sequence 
GCCATCCTCCTGCAGATGCAATGCGGACACTTGTGACGGCGGTTCTCAGCGGCGGAGAACCGCACAAGGAGGAACACAGA
GCACCGCCTCCGATCATATCTACGGGAACGACGAGGCTCCGGCCAAGTCGCAGTCCCGTGTCAGTGTGTGATTGGCTAGC
CAGTTGGTTGCAGAGTTGCTTCATGCGTCTCAGGATCGCAAAGTACTGGACGGAAGGGGTAAGGGCATCAGTCCATCATC
AGAGAGTGGCACAGCGTTCAGCGTACTGCCACCATCTCCCTGCANCCGTGTCCATGGAGAGCCACGAGACGCCATCGGCG
CGCAACTCCAGTGTACATAGAAAAGTATAGGGCCAGAGTACTGAAATAAGCATTTGATGAAGCCTGTGTGTTGTTTTCCA
GCCACTAACCGGTTACTGTTTTGATCAGGAACACCAGGTCAGATTATAGCTATAACGGTTTTCTGATGTGCTGATGTTGT
TGTAAGGCAGTTGTAGTGTACTAGTGCCCCTGTTTGGTAGTACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis