Browse Element(s) Details


Os.30588.2.S1_x_at

Description gb:AK108628.1
DB_XREF= gi:32993837
TID=Os.30588.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30588 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0529E05.18 (P0529E05.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-E10, full insert sequence.
FL= gb:AK108628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6344411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63400Os.32279.4.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63400Os.32279.2.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63410Os.32279.1.S1_at11/111+37062800..37064056expressed protein
LOC_Os01g63420Os.11384.1.S1_at11/111+37073656..37077825Coronatine-insensitive protein 1, putative, expressed
LOC_Os01g63430OsAffx.11713.3.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430OsAffx.11713.1.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430Os.10263.1.S1_at10/111+37077786..37080821hypothetical protein
LOC_Os01g63444Os.30588.4.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.4.S1_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.1.S1_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.5.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.2.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.3.S1_x_at10/111+37083746..37089766expressed protein
LOC_Os01g63460Os.42406.1.S1_at11/111+37090476..37092143myb family transcription factor, putative, expressed
LOC_Os01g63470Os.17214.1.S1_at11/111+37097867..37099284C2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30588.2.S1_x_at--359--8172Chr02:16329207..16329231 (25 bp)
GGAACGTAAGCTGCCTCAAGAGTCA
NONE
Os.30588.2.S1_x_at--41--1112Chr02:16329242..16329266 (25 bp)
AGTGGTTTCATGTTTTGTCTCTGCA
NONE
Os.30588.2.S1_x_at--8--751Chr01:37085373..37085397 (25 bp)
ATGTTATCCAGTTATCCTCTTCATA
LOC_Os01g63444
Os.30588.2.S1_x_at--317--7152Chr02:16329349..16329373 (25 bp)
GTCTTTGTCCAAAACCACCTACATA
NONE
Os.30588.2.S1_x_at--137--7971Chr01:37085552..37085576 (25 bp)
GGATCATTTGCTCTGGTATATAACT
LOC_Os01g63444
Os.30588.2.S1_x_at--411--8312Chr02:16329481..16329505 (25 bp)
GGCTACATATTTCTTCCTTCGAATG
NONE
Os.30588.2.S1_x_at--549--252Chr02:16330329..16330351 (23 bp)
ATATCATATGTTTGCTTTTCTCCTA
NONE
Os.30588.2.S1_x_at--1105--10371Chr01:37085627..37085651 (25 bp)
TTTTCTCCTATTTGCTGCACCACTA
LOC_Os01g63444
Os.30588.2.S1_x_at--83--5111Chr01:37085682..37085706 (25 bp)
GCACTGTGCCTTCTACTGAGACAAA
LOC_Os01g63444
Os.30588.2.S1_x_at--1113--10091Chr01:37085796..37085820 (25 bp)
TATGCTACGTCTGTAGAGGCCCCAA
LOC_Os01g63444
Os.30588.2.S1_x_at--727--6191Chr01:37085811..37085835 (25 bp)
GAGGCCCCAAATCATGAATACTTAG
LOC_Os01g63444
Target Sequence 
GGAACGTAAGCTGCCTCAAGAGTCAAGATAGTTTTAGTGGTTTCATGTTTTGTCTCTGCACTTAAACTGCAGAATTACTA
TGTTATCCAGTTATCCTCTTCATAAGCATAGGGTAAACTAGGAAACCCGGTTAAAGCTACAAGTCTTTGTCCAAAACCAC
CTACATATTGTGATACACTATAGATTCCATTGAAACTATATATATACAAGGGGAAGTATATATACAAGGGGAAGTACTTA
CATGTTTTAAAGTTTAATGGATCATTTGCTCTGGTATATAACTTATTATGATGGCTACATATTTCTTCCTTCGAATGTAT
ATCATATGTTTGCTTTTCTCCTATTTGCTGCACCACTATTGATGGTTTTACCAGATGAAAATAATTATGCACTGTGCCTT
CTACTGAGACAAAAGAACCTCCGGGAACAGAAACCGAAGATTTGCACTAGAAATACTCATTGGCAGATATGTTCCAGATA
AGTGGTTTTTTGAAGCATTTAATATGCTACGTCTGTAGAGGCCCCAAATCATGAATACTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30588.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis