Browse Element(s) Details


Os.32279.1.S1_at

Description gb:AK099561.1
DB_XREF= gi:32984770
TID=Os.32279.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.32279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0529E05.11 (P0529E05.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034J20, full insert sequence.
FL= gb:AK099561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6341011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63340NANA1+37037260..37041462transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63354Os.33474.1.S1_at11/111+37044837..37050010ELM2 domain containing protein, expressed
LOC_Os01g63354Os.18878.1.S1_at3/111+37044837..37050010ELM2 domain containing protein, expressed
LOC_Os01g63370OsAffx.11711.1.S1_at11/111+37052175..37053015hypothetical protein
LOC_Os01g63380OsAffx.11737.1.S1_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63380OsAffx.11737.1.S1_x_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63380OsAffx.11737.2.S1_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63389OsAffx.23902.2.S1_at11/111+37057557..37057880hypothetical protein
LOC_Os01g63400Os.32279.4.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63400Os.32279.2.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63410Os.32279.1.S1_at11/111+37062800..37064056expressed protein
LOC_Os01g63420Os.11384.1.S1_at11/111+37073656..37077825Coronatine-insensitive protein 1, putative, expressed
LOC_Os01g63430OsAffx.11713.3.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430OsAffx.11713.1.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430Os.10263.1.S1_at10/111+37077786..37080821hypothetical protein
LOC_Os01g63444Os.30588.4.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.4.S1_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.1.S1_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.5.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.2.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.3.S1_x_at10/111+37083746..37089766expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32279.1.S1_at--322--3491Chr01:37063489..37063513 (25 bp)
CAGGCCTTTGAGGAGACTGCTGAAG
LOC_Os01g63410
Os.32279.1.S1_at--518--7851Chr01:37063387..37063411 (25 bp)
GGTATGTTCTTCAAAAGCCTTGGGA
LOC_Os01g63410
Os.32279.1.S1_at--629--1671Chr01:37063372..37063396 (25 bp)
AGCCTTGGGAAGGTGAAGCCTCGCA
LOC_Os01g63410
Os.32279.1.S1_at--939--991Chr01:37063258..37063282 (25 bp)
AGGATGAACATTTACCTTGGGCTCA
LOC_Os01g63410
Os.32279.1.S1_at--252--9611Chr01:37063236..37063260 (25 bp)
TCATGGCAATACTCGGGCTTACAAT
LOC_Os01g63410
Os.32279.1.S1_at--318--9851Chr01:37063217..37063241 (25 bp)
TACAATTGCAAATGCCGTCTTCGCA
LOC_Os01g63410
Os.32279.1.S1_at--365--4231Chr01:37063203..37063227 (25 bp)
CCGTCTTCGCAACACCTGAGGTGGA
LOC_Os01g63410
Os.32279.1.S1_at--1128--10731Chr01:37063167..37063191 (25 bp)
TTGCAGCTCTGGGTCTAATATTCAT
LOC_Os01g63410
Os.32279.1.S1_at--221--3611Chr01:37063145..37063169 (25 bp)
CATTGGTTTGGTTGCTCAGGTCATC
LOC_Os01g63410
Os.32279.1.S1_at--1093--7811Chr01:37063127..37063151 (25 bp)
GGTCATCTACGAGCAGGATATCTCA
LOC_Os01g63410
Os.32279.1.S1_at--443--7951Chr01:37063112..37063136 (25 bp)
GGATATCTCATCACCAGAAGCTGAA
LOC_Os01g63410
Target Sequence 
CAGGCCTTTGAGGAGACTGCTGAAGTTCAAAGGCAGGAGATAGAAATGAACGAGAGGGTGCTTGAAGACTTCGAAGATTG
GATTGAGAAGGAGAAAAATGAAGGTATGTTCTTCAAAAGCCTTGGGAAGGTGAAGCCTCGCAACAAGAAGAAACTCACNG
TAAAACCNATACCCAAGCTAGAAGCACNAAAGGTCAAAGATATTGCAAAAGAAAGTGCAGGATCAAAAACTAGGATGAAC
ATTTACCTTGGGCTCATGGCAATACTCGGGCTTACAATTGCAAATGCCGTCTTCGCAACACCTGAGGTGGAGTGGAGGAA
GGTTGCAGCTCTGGGTCTAATATTCATTGGTTTGGTTGCTCAGGTCATCTACGAGCAGGATATCTCATCACCAGAAGCTG
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis