Browse Element(s) Details


OsAffx.11737.1.S1_x_at

Description gb:NM_190641.1
DB_XREF= gi:34908365
GEN=P0529E05.9
TID=OsAffx.11737.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0529E05.9 (P0529E05.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6338011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63320Os.14491.2.S1_x_at3/111+37030936..37031925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63320Os.47463.1.S1_x_at3/111+37030936..37031925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63330NANA1+37032030..37035946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63340NANA1+37037260..37041462transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63354Os.33474.1.S1_at11/111+37044837..37050010ELM2 domain containing protein, expressed
LOC_Os01g63354Os.18878.1.S1_at3/111+37044837..37050010ELM2 domain containing protein, expressed
LOC_Os01g63370OsAffx.11711.1.S1_at11/111+37052175..37053015hypothetical protein
LOC_Os01g63380OsAffx.11737.1.S1_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63380OsAffx.11737.1.S1_x_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63380OsAffx.11737.2.S1_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63389OsAffx.23902.2.S1_at11/111+37057557..37057880hypothetical protein
LOC_Os01g63400Os.32279.4.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63400Os.32279.2.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63410Os.32279.1.S1_at11/111+37062800..37064056expressed protein
LOC_Os01g63420Os.11384.1.S1_at11/111+37073656..37077825Coronatine-insensitive protein 1, putative, expressed
LOC_Os01g63430OsAffx.11713.3.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430OsAffx.11713.1.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430Os.10263.1.S1_at10/111+37077786..37080821hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11737.1.S1_x_at--665--6451Chr01:37056342..37056366 (25 bp)
GATCACACCTTGTCAACTTCTGAAT
LOC_Os01g63380
OsAffx.11737.1.S1_x_at--862--3132Chr04:1749295..1749314 (20 bp)
AATTAAAGTTTCTTGCTCATGCAAA
NONE
OsAffx.11737.1.S1_x_at--747--211Chr01:37056464..37056488 (25 bp)
ATTTGTTGGCATACTATGCCGCCAC
LOC_Os01g63380
OsAffx.11737.1.S1_x_at--962--10131Chr01:37056478..37056502 (25 bp)
TATGCCGCCACGCATTGAAGGTGTT
LOC_Os01g63380
OsAffx.11737.1.S1_x_at--99--8051Chr01:37056521..37056545 (25 bp)
GGAGTTACCATCAGAGTACATCTTG
LOC_Os01g63380
OsAffx.11737.1.S1_x_at--206--6431Chr01:37056569..37056593 (25 bp)
GATAGGATCATCACAGGCTAATCGA
LOC_Os01g63380
OsAffx.11737.1.S1_x_at--138--7971Chr01:37056642..37056666 (25 bp)
GGATCATTATGTCGGTCTTACAACA
LOC_Os01g63380
OsAffx.11737.1.S1_x_at--263--4731Chr01:37057043..37057067 (25 bp)
GCTGGTGGAACTTCTACAACATCTG
LOC_Os01g63380
OsAffx.11737.1.S1_x_at--698--7071Chr01:37057070..37057094 (25 bp)
GTAATTCCTAATTTCACCGTATCGA
LOC_Os01g63380
OsAffx.11737.1.S1_x_at--15--6371Chr01:37057108..37057132 (25 bp)
GATGCCAAGTGAGGTATCAGTCCAT
LOC_Os01g63380
OsAffx.11737.1.S1_x_at--407--7371Chr01:37057116..37057140 (25 bp)
GTGAGGTATCAGTCCATTTAAACAT
LOC_Os01g63380
Target Sequence 
GATCACACCTTGTCAACTTCTGAATACAAGGTTATTGATTCAGCTAAGCATGGAGAGCATGGTTTCTTGGTGAAGTTTGA
TCCCAATGAAATTAAAGTTTCTTGCTCATGCAAAAAGTTTGAATTTGTTGGCATACTATGCCGCCACGCATTGAAGGTGT
TGGACCATAACAATATCAAGGAGTTACCATCAGAGTACATCTTGAAGAGATGGACAAAATATGCAAAGATAGGATCATCA
CAGGCTAATCGAAAATGTGCTAATGATGAAGATGCTAGAGTTGTTCTAGCTAGGAGGTATGGATCATTATGTCGGTCTTA
CAACAATATATTAAGCAAAGCTGCAGAAAATGAGGAAGCTTATGCACTACTAGAAAGAACTTCATTGGAATTGATGGAAC
AAGTTGACCAAATCATGCAAGCAAACAAGTCAGAAGGTAAATCTAAAGTGGACAGGAATGCTGGTGGAACTTCTACAACA
TCTGAAGTAATTCCTAATTTCACCGTATCGAATGAGAATGATCAGATGCCAAGTGAGGTATCAGTCCATTTAAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11737.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis