Browse Element(s) Details


Os.33474.1.S1_at

Description gb:AK100453.1
DB_XREF= gi:32985662
TID=Os.33474.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0529E05.8 (P0529E05.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091D06, full insert sequence.
FL= gb:AK069637.1 gb:AK100453.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6335411/11ELM2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63290OsAffx.23901.1.S1_at11/111+37014631..37022478Major Facilitator Superfamily protein, expressed
LOC_Os01g63290Os.17497.1.S1_a_at11/111+37014631..37022478Major Facilitator Superfamily protein, expressed
LOC_Os01g63310OsAffx.23901.2.S1_s_at11/111+37023857..37025812expressed protein
LOC_Os01g63320Os.14491.2.S1_x_at3/111+37030936..37031925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63320Os.47463.1.S1_x_at3/111+37030936..37031925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63330NANA1+37032030..37035946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63340NANA1+37037260..37041462transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63354Os.33474.1.S1_at11/111+37044837..37050010ELM2 domain containing protein, expressed
LOC_Os01g63354Os.18878.1.S1_at3/111+37044837..37050010ELM2 domain containing protein, expressed
LOC_Os01g63370OsAffx.11711.1.S1_at11/111+37052175..37053015hypothetical protein
LOC_Os01g63380OsAffx.11737.1.S1_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63380OsAffx.11737.1.S1_x_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63380OsAffx.11737.2.S1_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63389OsAffx.23902.2.S1_at11/111+37057557..37057880hypothetical protein
LOC_Os01g63400Os.32279.4.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63400Os.32279.2.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63410Os.32279.1.S1_at11/111+37062800..37064056expressed protein
LOC_Os01g63420Os.11384.1.S1_at11/111+37073656..37077825Coronatine-insensitive protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006259biological_processDNA metabolism
GO:0006265biological_processDNA topological change
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003918molecular_functionDNA topoisomerase (ATP-hydrolyzing) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33474.1.S1_at--1100--3391Chr01:37045336..37045360 (25 bp)
CAGCATGCCCAGAATGTGAAGAGCA
LOC_Os01g63354
Os.33474.1.S1_at--65--5591Chr01:37045305..37045329 (25 bp)
GAAATGGCTGACAGCTACCTGTCCA
LOC_Os01g63354
Os.33474.1.S1_at--702--9971Chr01:37045290..37045314 (25 bp)
TACCTGTCCACATTCTTTTTTGCAT
LOC_Os01g63354
Os.33474.1.S1_at--601--8051Chr01:37045244..37045268 (25 bp)
GGAGAGTGACCTCAATCGATTTGTC
LOC_Os01g63354
Os.33474.1.S1_at--1023--10571Chr01:37045217..37045241 (25 bp)
TTCTCCATGTGGTCATTAGTCTGAT
LOC_Os01g63354
Os.33474.1.S1_at--274--7391Chr01:37045171..37045195 (25 bp)
GTGAGTCGTTCACTTTGCTAGAACA
LOC_Os01g63354
Os.33474.1.S1_at--207--4871Chr01:37045155..37045179 (25 bp)
GCTAGAACACATCCATTCTGCAGAG
LOC_Os01g63354
Os.33474.1.S1_at--722--851Chr01:37045118..37045142 (25 bp)
ATGGCAGACCATTCTCAATGTCTGT
LOC_Os01g63354
Os.33474.1.S1_at--205--8991Chr01:37045050..37045074 (25 bp)
TGAATTGTTTCCCATTGTACAGGAA
LOC_Os01g63354
Os.33474.1.S1_at--1049--8171Chr01:37044957..37044981 (25 bp)
GGAAGGGCCAATGTGTCGCCTTTAG
LOC_Os01g63354
Os.33474.1.S1_at--860--3191Chr01:37044949..37044973 (25 bp)
CAATGTGTCGCCTTTAGCAAGCTTT
LOC_Os01g63354
Target Sequence 
CAGCATGCCCAGAATGTGAAGAGCATTTCATGAAATGGCTGACAGCTACCTGTCCACATTCTTTTTTGCATGTGCACTTG
TTTTGTCTATGTGGAGAGTGACCTCAATCGATTTGTCATTTCTCCATGTGGTCATTAGTCTGATCTTGGAAGATATTTGG
ATAAAGTGAGTCGTTCACTTTGCTAGAACACATCCATTCTGCAGAGAAACTTATTTGAATGGCAGACCATTCTCAATGTC
TGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCATTGTACAGGAAAAGAAAAGG
AAAAGTAGATTGGGGGAAAGAAAACAAATGGTCTGGAACATTTCTTATTATTGAGACTTGGAAGGGCCAATGTGTCGCCT
TTAGCAAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis