Browse Element(s) Details


OsAffx.23901.2.S1_s_at

Description tigr:9629.m06261
TID=OsAffx.23901.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6331011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63270Os.2623.1.S1_at11/111+36997170..37003327Alpha-glucan phosphorylase, H isozyme, putative, expressed
LOC_Os01g63280Os.18739.1.S1_at11/111+37010627..37013843Protein kinase domain containing protein, expressed
LOC_Os01g63290OsAffx.23901.1.S1_at11/111+37014631..37022478Major Facilitator Superfamily protein, expressed
LOC_Os01g63290Os.17497.1.S1_a_at11/111+37014631..37022478Major Facilitator Superfamily protein, expressed
LOC_Os01g63310OsAffx.23901.2.S1_s_at11/111+37023857..37025812expressed protein
LOC_Os01g63320Os.14491.2.S1_x_at3/111+37030936..37031925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63320Os.47463.1.S1_x_at3/111+37030936..37031925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63330NANA1+37032030..37035946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63340NANA1+37037260..37041462transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63354Os.33474.1.S1_at11/111+37044837..37050010ELM2 domain containing protein, expressed
LOC_Os01g63354Os.18878.1.S1_at3/111+37044837..37050010ELM2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23901.2.S1_s_at--112--971Chr01:37024419..37024443 (25 bp)
AGGACCTGCTCGACCGTGGGTTCAG
LOC_Os01g63310
OsAffx.23901.2.S1_s_at--366--9311Chr01:37024410..37024434 (25 bp)
TCGACCGTGGGTTCAGCTCCAACTC
LOC_Os01g63310
OsAffx.23901.2.S1_s_at--696--10771Chr01:37024360..37024384 (25 bp)
TTGGAGGCCGCCTTGTCAGGCCCCG
LOC_Os01g63310
OsAffx.23901.2.S1_s_at--157--3951Chr01:37024206..37024230 (25 bp)
CGGACCTGCGCGTCCGTGGGTACAA
LOC_Os01g63310
OsAffx.23901.2.S1_s_at--939--4631Chr01:37024197..37024221 (25 bp)
GCGTCCGTGGGTACAACCCCAAGAT
LOC_Os01g63310
OsAffx.23901.2.S1_s_at--514--2211Chr01:37024185..37024209 (25 bp)
ACAACCCCAAGATGCAGCGGTGCAA
LOC_Os01g63310
OsAffx.23901.2.S1_s_at--432--3971Chr01:37024168..37024192 (25 bp)
CGGTGCAACAGCAACTTGAGCGCGC
LOC_Os01g63310
OsAffx.23901.2.S1_s_at--521--2491Chr01:37024162..37024186 (25 bp)
AACAGCAACTTGAGCGCGCGCAGCT
LOC_Os01g63310
OsAffx.23901.2.S1_s_at--221--4071Chr01:37024104..37024128 (25 bp)
CGAGGCGCAGCCACGTGGACGTCAA
LOC_Os01g63310
OsAffx.23901.2.S1_s_at--1084--5931Chr01:37024054..37024078 (25 bp)
GAGCACGTGCTGGAGCGTAACCGCA
LOC_Os01g63310
OsAffx.23901.2.S1_s_at--195--4911Chr01:37023984..37024008 (25 bp)
GCTTCTACCTGACGCCGATGCGCAG
LOC_Os01g63310
Target Sequence 
AGGACCTGCTCGACCGTGGGTTCAGCTCCAACTCCCTCATCGAGGACATCTCCGCGAGCTTGGAGGCCGCCTTGTCAGGC
CCCGGCAGCGCCAAGAAGCCACGGCGGTGGCGCAAGGCGTGGAGCCTGTGGGGGTTCATTCACCGGAGGGCCTCCGGCCG
CCGGAGCGGCGGCCCGTCCGACATCGCCGACCGCTCGTTCTCGGAGGCGTGGCCGGACCTGCGCGTCCGTGGGTACAACC
CCAAGATGCAGCGGTGCAACAGCAACTTGAGCGCGCGCAGCTCGTTCAGCAGCAACAGCGGCGGGCTTGGCAGCTCGAGG
CGCAGCCACGTGGACGTCAACGGGAGCAGCGCGAGGCGTCGGGAGGAGCACGTGCTGGAGCGTAACCGCAGCGCGCGGTA
CTCGCCACCGGGGCGCGTGGACAACGGCATGCTGCGCTTCTACCTGACGCCGATGCGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23901.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis