Browse Element(s) Details


Os.18739.1.S1_at

Description gb:CB664209
DB_XREF= gi:29667934
DB_XREF=OSJNEd09M21.r
CLONE=OSJNEd09M21
TID=Os.18739.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.18739 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0529H11.30 (P0529H11.30), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6328011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63250Os.7799.1.S1_at11/111+36983359..36987578Machado-Joseph disease, putative, expressed
LOC_Os01g63260Os.33215.1.S1_at11/111+36993814..369949853-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g63270Os.2623.1.S1_at11/111+36997170..37003327Alpha-glucan phosphorylase, H isozyme, putative, expressed
LOC_Os01g63280Os.18739.1.S1_at11/111+37010627..37013843Protein kinase domain containing protein, expressed
LOC_Os01g63290OsAffx.23901.1.S1_at11/111+37014631..37022478Major Facilitator Superfamily protein, expressed
LOC_Os01g63290Os.17497.1.S1_a_at11/111+37014631..37022478Major Facilitator Superfamily protein, expressed
LOC_Os01g63310OsAffx.23901.2.S1_s_at11/111+37023857..37025812expressed protein
LOC_Os01g63320Os.14491.2.S1_x_at3/111+37030936..37031925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63320Os.47463.1.S1_x_at3/111+37030936..37031925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63330NANA1+37032030..37035946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63340NANA1+37037260..37041462transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18739.1.S1_at--634--9671Chr01:37011154..37011264 (25 bp)
TCACCACGCAATGGGCGCTGCGGAA
LOC_Os01g63280
Os.18739.1.S1_at--839--6671Chr01:37010989..37011013 (25 bp)
GTTGCGCCGAGGTCCTCTGGTCCAT
LOC_Os01g63280
Os.18739.1.S1_at--693--6991Chr01:37010880..37010904 (25 bp)
GTACGGGCCGTCGATCACGAGCCTG
LOC_Os01g63280
Os.18739.1.S1_at--785--4011Chr01:37010872..37010896 (25 bp)
CGTCGATCACGAGCCTGAAGGAGTA
LOC_Os01g63280
Os.18739.1.S1_at--798--7591Chr01:37010806..37010830 (25 bp)
GGGAATTGGGAATGCTTGTCTACGA
LOC_Os01g63280
Os.18739.1.S1_at--315--10831Chr01:37010801..37010825 (25 bp)
TTGGGAATGCTTGTCTACGAGGGAA
LOC_Os01g63280
Os.18739.1.S1_at--3--7491Chr01:37010776..37010800 (25 bp)
GTGGGAAATGGGATCATATGTCATC
LOC_Os01g63280
Os.18739.1.S1_at--1128--9593Chr11:20234060..20234103 (24 bp)
TCATATGTCATCAGAAGTTCAGAAT
NONE
Os.18739.1.S1_at--220--5271Chr01:37010742..37010766 (25 bp)
GAATGCGCGCGTTGTACTTTGTAAA
LOC_Os01g63280
Os.18739.1.S1_at--195--5531Chr01:37010717..37010741 (25 bp)
GAAACTTTGGGCAAGCTTACGTCAA
LOC_Os01g63280
Os.18739.1.S1_at--184--5151Chr01:37010707..37010731 (25 bp)
GCAAGCTTACGTCAAAATTTGTATT
LOC_Os01g63280
Target Sequence 
TCACCACGCAATGGGCGCTGCGGAAGTGCCGGGACGGCGACGCGGTGGTGGCGATGGACGCCCGGATGCGGAGGACCAGC
GCGGTGGTGGCGGCCATGGAGAAAGTGATGGCGCTGGCGGCCGAGTGCACCGCGCCGGACCGCGCGGCGCGCCCTGCCAT
GCGGCGTTGCGCCGAGGTCCTCTGGTCCATCCGGCGCGACTTCCAGCACGAGCAGCAGCGCGCCACCGCCGCCGCCGCCG
CAGGCGCCAGAGGGAAGCGGCACGACGGCTCCACGTACGGGCCGTCGATCACGAGCCTGAAGGAGTAGTACGGGTTGGGC
ACCGCCGCACCGGAGCCGTTGCCCGATGGGGAATTGGGAATGCTTGTCTACGAGGGAAGTGGGAAATGGGATCATATGTC
ATCAGAAGTTCAGAATGCGCGCGTTGTACTTTGTAAAGAAACTTTGGGCAAGCTTACGTCAAAATTTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18739.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis