Browse Element(s) Details


Os.2623.1.S1_at

Description gb:AK103367.1
DB_XREF= gi:32988576
TID=Os.2623.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.2623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) alpha 1,4-glucan phosphorylase H isozyme (P0529H11.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126P09, full insert sequence.
FL= gb:AK103367.1 gb:AK105410.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6327011/11Alpha-glucan phosphorylase, H isozyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63220Os.35890.1.S1_at11/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63220OsAffx.23899.1.S1_at10/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63230Os.7203.2.S1_x_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63230Os.7203.1.S1_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63240Os.45898.1.S1_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.45898.1.S1_x_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.12944.1.S1_at10/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63250Os.7799.1.S1_at11/111+36983359..36987578Machado-Joseph disease, putative, expressed
LOC_Os01g63260Os.33215.1.S1_at11/111+36993814..369949853-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g63270Os.2623.1.S1_at11/111+36997170..37003327Alpha-glucan phosphorylase, H isozyme, putative, expressed
LOC_Os01g63280Os.18739.1.S1_at11/111+37010627..37013843Protein kinase domain containing protein, expressed
LOC_Os01g63290OsAffx.23901.1.S1_at11/111+37014631..37022478Major Facilitator Superfamily protein, expressed
LOC_Os01g63290Os.17497.1.S1_a_at11/111+37014631..37022478Major Facilitator Superfamily protein, expressed
LOC_Os01g63310OsAffx.23901.2.S1_s_at11/111+37023857..37025812expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005829cellular_componentcytosol
GO:0004645molecular_functionphosphorylase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2623.1.S1_at--213--7311Chr01:36998060..36998084 (25 bp)
GTGCTTTTGGCACCTATGACTATGC
LOC_Os01g63270
Os.2623.1.S1_at--249--9311Chr01:36998035..36998059 (25 bp)
TCCCCTCTTGGATTCTCTTGAAGGA
LOC_Os01g63270
Os.2623.1.S1_at--818--7491Chr01:36997994..36998018 (25 bp)
GTGGTGATTATTTCCTCGTTGGCTA
LOC_Os01g63270
Os.2623.1.S1_at--1084--1551Chr01:36997959..36997983 (25 bp)
AGCTATATTGATGCACAGGCCCAGG
LOC_Os01g63270
Os.2623.1.S1_at--841--8231Chr01:36997502..36997526 (25 bp)
GGCAAATTCAGCAGCGACCGTACTA
LOC_Os01g63270
Os.2623.1.S1_at--937--1771Chr01:36997486..36997510 (25 bp)
ACCGTACTATCGCTCAGTATGCAAA
LOC_Os01g63270
Os.2623.1.S1_at--237--9091Chr01:36997443..36997467 (25 bp)
TGCTAGCCCTGTCTCCTAAATACGA
LOC_Os01g63270
Os.2623.1.S1_at--1104--7751Chr01:36997347..36997371 (25 bp)
GGTGAATAACACTTGCTTCCGTTGT
LOC_Os01g63270
Os.2623.1.S1_at--1045--8531Chr01:36997318..36997342 (25 bp)
TGGAGCGCGGAGAACCCAGCAACGA
LOC_Os01g63270
Os.2623.1.S1_at--814--5151Chr01:36997260..36997284 (25 bp)
GCAACCCTCTTTTGCTTTATGCTAA
LOC_Os01g63270
Os.2623.1.S1_at--34--6991Chr01:36997196..36997220 (25 bp)
GTACTGGATGGAATCTTCCGTCACA
LOC_Os01g63270
Target Sequence 
GTGCTTTTGGCACCTATGACTATGCTCCCCTCTTGGATTCTCTTGAAGGAAATTCTGGATTTGGTCGTGGTGATTATTTC
CTCGTTGGCTATGATTTCCCAAGCTATATTGATGCACAGGCCCAGGTTGATGAAGCCTACAAGGATAAGAAAAAATGGAT
CAAGATGTCTATACTGAACACAGCTGGAAGTGGCAAATTCAGCAGCGACCGTACTATCGCTCAGTATGCAAAGGAAATAT
GGGGCATTACTGCTAGCCCTGTCTCCTAAATACGANATGCACCAAGACGAAGCTCATCAAGATGGACGCTATATTATGCA
ATAATAAGGATTAGATAACGATCCACGGTGAATAACACTTGCTTCCGTTGTAAGCTGGAGCGCGGAGAACCCAGCAACGA
GTGAAGCTGGCACTTTGAAGTGCGCTGGAAAACGCAACCCTCTTTTGCTTTATGCTAATATATATGTATTTGGTCTGGAA
CAAGGTACTTGTGAGATGTACTGGATGGAATCTTCCGTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis