Browse Element(s) Details


Os.7203.2.S1_x_at

Description gb:AK071217.1
DB_XREF= gi:32981240
TID=Os.7203.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative axi 1(auxin-independent growth promoter) protein (P0529H11.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085L22, full insert sequence.
FL= gb:AK071217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6323011/11Plant protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63180Os.42421.1.S1_at11/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63180Os.18847.1.S1_at6/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63190Os.14830.1.S1_a_at11/111+36949678..36954511Multicopper oxidase family protein, expressed
LOC_Os01g63200Os.42420.1.S1_at11/111+36961180..36963829Multicopper oxidase family protein, expressed
LOC_Os01g63210Os.11253.1.S1_at11/111+36966475..36967417SOUL heme-binding family protein, putative, expressed
LOC_Os01g63220Os.35890.1.S1_at11/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63220OsAffx.23899.1.S1_at10/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63230Os.7203.2.S1_x_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63230Os.7203.1.S1_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63240Os.45898.1.S1_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.45898.1.S1_x_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.12944.1.S1_at10/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63250Os.7799.1.S1_at11/111+36983359..36987578Machado-Joseph disease, putative, expressed
LOC_Os01g63260Os.33215.1.S1_at11/111+36993814..369949853-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g63270Os.2623.1.S1_at11/111+36997170..37003327Alpha-glucan phosphorylase, H isozyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7203.2.S1_x_at--823--5671Chr01:36972191..36972215 (25 bp)
GACATTTCGATTGTGGATTCCTTGC
LOC_Os01g63230
Os.7203.2.S1_x_at--227--7931Chr01:36972177..36972201 (25 bp)
GGATTCCTTGCCACTAGCTTATAAA
LOC_Os01g63230
Os.7203.2.S1_x_at--1116--10411Chr01:36972141..36972165 (25 bp)
TTATATGAGAGCACCCACTTCTTGG
LOC_Os01g63230
Os.7203.2.S1_x_at--245--10791Chr01:36972022..36972144 (25 bp)
TTGGGCCAAGGCTTCTTACTACAGA
LOC_Os01g63230
Os.7203.2.S1_x_at--1149--2131Chr01:36972002..36972026 (25 bp)
ACAGAGCTTTCTCAAGGACACTGAA
LOC_Os01g63230
Os.7203.2.S1_x_at--1058--2911Chr01:36971678..36971702 (25 bp)
AAGGACATGCTCTCATTTACTGGTT
LOC_Os01g63230
Os.7203.2.S1_x_at--503--10731Chr01:36971655..36971679 (25 bp)
TTGCAGCCACAACCTAACACATAAA
LOC_Os01g63230
Os.7203.2.S1_x_at--1079--2991Chr01:36971610..36971634 (25 bp)
AATGAGACTCAACGTGCGGCACTGG
LOC_Os01g63230
Os.7203.2.S1_x_at--726--9131Chr01:36971540..36971564 (25 bp)
TGCCCTATGACTCCTCGTGAAGTAG
LOC_Os01g63230
Os.7203.2.S1_x_at--1161--3991Chr01:36971525..36971549 (25 bp)
CGTGAAGTAGCTCTTTTCCTCAAAG
LOC_Os01g63230
Os.7203.2.S1_x_at--1016--7571Chr01:36971496..36971520 (25 bp)
GGGCTATCCTTCCAGCACAAAGATC
LOC_Os01g63230
Target Sequence 
GACATTTCGATTGTGGATTCCTTGCCACTAGCTTATAAAGGATTGAAACTTTATATGAGAGCACCCACTTCTTGGGCCAA
GGCTTCTTACTACAGAGCTTTCTCAAGGACACTGAAGAAGGCCAAAGTTGTGAAATTCACACATACAGATTCACGAATTG
TTAACAATGGTCTTCCCCCATCCATCCAACGACTCCGTTGTCGGGCAAATTATGAGGCACTAAGATTCCACAAAGAAATT
GAAGAGCTGAGTACTGCTCTAGTAGATAGACTGAGGAATGGATCCAATCATTATATCGCACTTCACTTAAGGTATGAGAA
GGACATGCTCTCATTTACTGGTTGCAGCCACAACCTAACACATAAAGAGGCAGATGAGCTGAGAGAAATGAGACTCAACG
TGCGGCACTGGAAAGAGAAGGAAATCAACAGTAGGGAGAGGAGACTCCAAGGACGCTGCCCTATGACTCCTCGTGAAGTA
GCTCTTTTCCTCAAAGCTATGGGCTATCCTTCCAGCACAAAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7203.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis