Browse Element(s) Details


Os.11253.1.S1_at

Description gb:AK102887.1
DB_XREF= gi:32988096
TID=Os.11253.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0529H11.19 (P0529H11.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112K22, full insert sequence.
FL= gb:AK063822.1 gb:AK102887.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6321011/11SOUL heme-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63170Os.38395.4.S1_x_at11/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.3.S1_x_at10/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.1.S1_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.2.S1_x_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63180Os.42421.1.S1_at11/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63180Os.18847.1.S1_at6/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63190Os.14830.1.S1_a_at11/111+36949678..36954511Multicopper oxidase family protein, expressed
LOC_Os01g63200Os.42420.1.S1_at11/111+36961180..36963829Multicopper oxidase family protein, expressed
LOC_Os01g63210Os.11253.1.S1_at11/111+36966475..36967417SOUL heme-binding family protein, putative, expressed
LOC_Os01g63220Os.35890.1.S1_at11/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63220OsAffx.23899.1.S1_at10/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63230Os.7203.2.S1_x_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63230Os.7203.1.S1_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63240Os.45898.1.S1_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.45898.1.S1_x_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.12944.1.S1_at10/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63250Os.7799.1.S1_at11/111+36983359..36987578Machado-Joseph disease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11253.1.S1_at--922--5071Chr01:36967201..36967225 (25 bp)
GCACCAACGAGGTCATGGTCCCCGT
LOC_Os01g63210
Os.11253.1.S1_at--618--8571Chr01:36967216..36967240 (25 bp)
TGGTCCCCGTCGAGTGATACGGCGA
LOC_Os01g63210
Os.11253.1.S1_at--947--6471Chr01:36967231..36967255 (25 bp)
GATACGGCGAGACTCCATTGTTGGT
LOC_Os01g63210
Os.11253.1.S1_at--563--5711Chr01:36967241..36967265 (25 bp)
GACTCCATTGTTGGTGTCTAGTGAT
LOC_Os01g63210
Os.11253.1.S1_at--716--7151Chr01:36967256..36967280 (25 bp)
GTCTAGTGATGTACTGATGCGCATG
LOC_Os01g63210
Os.11253.1.S1_at--955--9151Chr01:36967273..36967297 (25 bp)
TGCGCATGTACTTTTATCAGGGTGT
LOC_Os01g63210
Os.11253.1.S1_at--1142--391Chr01:36967288..36967312 (25 bp)
ATCAGGGTGTCCTTGTTACTCCTAG
LOC_Os01g63210
Os.11253.1.S1_at--129--10111Chr01:36967310..36967334 (25 bp)
TAGGCCCTAGCTATTTCTCTATTTC
LOC_Os01g63210
Os.11253.1.S1_at--702--3732Chr01:36967326..36967350 (25 bp)
CTCTATTTCTTTATCCTTTTGACTT
LOC_Os01g63210
Os.11253.1.S1_at--680--571Chr01:36967338..36967362 (25 bp)
ATCCTTTTGACTTTGTTCTGTACTG
LOC_Os01g63210
Os.11253.1.S1_at--684--10591Chr01:36967353..36967377 (25 bp)
TTCTGTACTGATGTATGTTTGGATC
LOC_Os01g63210
Target Sequence 
GCACCAACGAGGTCATGGTCCCCGTCGAGTGATACGGCGAGACTCCATTGTTGGTGTCTAGTGATGTACTGATGCGCATG
TACTTTTATCAGGGTGTCCTTGTTACTCCTAGGCCCTAGCTATTTCTCTATTTCTTTATCCTTTTGACTTTGTTCTGTAC
TGATGTATGTTTGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis