Browse Element(s) Details


Os.42420.1.S1_at

Description gb:CA765921
DB_XREF= gi:27547754
DB_XREF=AF53-Rpf_09_G17_T7_075.ab1
CLONE=C0003233
TID=Os.42420.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative laccase (P0529H11.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6320011/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63170Os.38395.4.S1_x_at11/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.3.S1_x_at10/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.1.S1_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.2.S1_x_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63180Os.42421.1.S1_at11/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63180Os.18847.1.S1_at6/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63190Os.14830.1.S1_a_at11/111+36949678..36954511Multicopper oxidase family protein, expressed
LOC_Os01g63200Os.42420.1.S1_at11/111+36961180..36963829Multicopper oxidase family protein, expressed
LOC_Os01g63210Os.11253.1.S1_at11/111+36966475..36967417SOUL heme-binding family protein, putative, expressed
LOC_Os01g63220Os.35890.1.S1_at11/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63220OsAffx.23899.1.S1_at10/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63230Os.7203.2.S1_x_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63230Os.7203.1.S1_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63240Os.45898.1.S1_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.45898.1.S1_x_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.12944.1.S1_at10/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63250Os.7799.1.S1_at11/111+36983359..36987578Machado-Joseph disease, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42420.1.S1_at--146--5031Chr01:36963108..36963132 (25 bp)
GCAGTACAGTAGCACGCTCGGCACC
LOC_Os01g63200
Os.42420.1.S1_at--539--2211Chr01:36963221..36963245 (25 bp)
ACAACCTCGTGGACCCGCAGGTGCG
LOC_Os01g63200
Os.42420.1.S1_at--920--4671Chr01:36963277..36963301 (25 bp)
GCGGTGATCCGGTTCATGGCGAACA
LOC_Os01g63200
Os.42420.1.S1_at--804--10531Chr01:36963289..36963309 (21 bp)
TTCATGGCGAACAACCCAGGTATGT
LOC_Os01g63200
Os.42420.1.S1_at--901--651Chr01:36963444..36963468 (25 bp)
ATGCACTGTCACTTGGACGCGCACC
LOC_Os01g63200
Os.42420.1.S1_at--772--6151Chr01:36963488..36963512 (25 bp)
GGTTTTCGAGGTGCTGAACGGACCA
LOC_Os01g63200
Os.42420.1.S1_at--403--9271Chr01:36963536..36963560 (25 bp)
TCCTGTTGACCATCCAAAATGCCAT
LOC_Os01g63200
Os.42420.1.S1_at--521--3031Chr01:36963553..36963577 (25 bp)
AATGCCATGGATGAACGCCTTACAG
LOC_Os01g63200
Os.42420.1.S1_at--337--4171Chr01:36963568..36963592 (25 bp)
CGCCTTACAGATTATGTGCGTATAT
LOC_Os01g63200
Os.42420.1.S1_at--494--9911Chr01:36963601..36963625 (25 bp)
TACTCGACAAGTTCATGATACCAGG
LOC_Os01g63200
Os.42420.1.S1_at--96--1111Chr01:36963671..36963695 (25 bp)
AGTGTGCGAGGCGTGCCCGTATTCA
LOC_Os01g63200
Target Sequence 
GCAGTACAGTAGCACGCTCGGCACCGAGAACCACCCGATCCACCTGCACGGGTTCGACTTCTACCTGCTGGCGCAGGGGC
TCGGCCGGTTCAACCNGTCGATGAAGAGCAAGTACAACCTCGTGGACCCGCAGGTGCGCAANACCGTCGCCGTGCCGGCC
GGCGGCTGGGCGGTGATCCGGTTCATGGCGAACAACCCAGGTATGTGGTTCATGCACTGTCACTTGGACGCGCACCTGCC
GTTGGGGCTGGCCATGGTTTTCGAGGTGCTGAACGGACCAGCCCCGAATCTGCTCCCTCCACCTCCTGTTGACCATCCAA
AATGCCATGGATGAACGCCTTACAGATTATGTGCGTATATACAGAGTATACTCGACAAGTTCATGATACCAGGAATGAGA
TTGGGTATAGGGGTTTTCACCTGAAAAAGAAAGATTTGAGTGTGCGAGGCGTGCCCGTATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis