Browse Element(s) Details


OsAffx.23899.1.S1_at

Description tigr:9629.m06250
TID=OsAffx.23899.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SOUL heme-binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6322010/11pfkB-type carbohydrate kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63180Os.42421.1.S1_at11/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63180Os.18847.1.S1_at6/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63190Os.14830.1.S1_a_at11/111+36949678..36954511Multicopper oxidase family protein, expressed
LOC_Os01g63200Os.42420.1.S1_at11/111+36961180..36963829Multicopper oxidase family protein, expressed
LOC_Os01g63210Os.11253.1.S1_at11/111+36966475..36967417SOUL heme-binding family protein, putative, expressed
LOC_Os01g63220Os.35890.1.S1_at11/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63220OsAffx.23899.1.S1_at10/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63230Os.7203.2.S1_x_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63230Os.7203.1.S1_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63240Os.45898.1.S1_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.45898.1.S1_x_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.12944.1.S1_at10/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63250Os.7799.1.S1_at11/111+36983359..36987578Machado-Joseph disease, putative, expressed
LOC_Os01g63260Os.33215.1.S1_at11/111+36993814..369949853-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g63270Os.2623.1.S1_at11/111+36997170..37003327Alpha-glucan phosphorylase, H isozyme, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23899.1.S1_at--1141--2111NONE
ACAGGCTTTTCAGGTCTACAGAAGA
NONE
OsAffx.23899.1.S1_at--1153--3051Chr01:36973025..36973049 (25 bp)
AATCTTTTTCCTAGTGTTCTAGTCA
LOC_Os01g63220
OsAffx.23899.1.S1_at--145--5391Chr01:36973052..36973076 (25 bp)
GAAGCACTATTCTAGCACTTAGTGA
LOC_Os01g63220
OsAffx.23899.1.S1_at--1112--6591Chr01:36973087..36973111 (25 bp)
GATTGATGTATATTTCCCACTTCAT
LOC_Os01g63220
OsAffx.23899.1.S1_at--35--451Chr01:36973118..36973142 (25 bp)
ATCTTTCCTTGTCGAGGGCATGGGA
LOC_Os01g63220
OsAffx.23899.1.S1_at--80--4611Chr01:36973151..36973175 (25 bp)
GCGACAGTCAGATTTTCATTCCTAT
LOC_Os01g63220
OsAffx.23899.1.S1_at--31--9591Chr01:36973166..36973190 (25 bp)
TCATTCCTATAACCTAATGCAGAGG
LOC_Os01g63220
OsAffx.23899.1.S1_at--151--6171Chr01:36973187..36973211 (25 bp)
GAGGATTTAGATAGCCAGGAAACAC
LOC_Os01g63220
OsAffx.23899.1.S1_at--394--1131Chr01:36973247..36973271 (25 bp)
AGTGCATCTGTTGGTTATTTGTGTC
LOC_Os01g63220
OsAffx.23899.1.S1_at--556--10191Chr01:36973262..36973286 (25 bp)
TATTTGTGTCTTGAACCTCTGTTTC
LOC_Os01g63220
OsAffx.23899.1.S1_at--980--5431Chr01:36973274..36973298 (25 bp)
GAACCTCTGTTTCAACTTGGCGATA
LOC_Os01g63220
Target Sequence 
ACAGGCTTTTCAGGTCTACAGAAGACGCTTTTAATTAGAGGGAAACAGGTGATAATCATGTTTCATCAAATAAATCTTTT
TCCTAGTGTTCTAGTCATAGAAGCACTATTCTAGCACTTAGTGAGGATATAATTGATTGATGTATATTTCCCACTTCATT
TTCTCATCTTTCCTTGTCGAGGGCATGGGACTAGAATTGCGACAGTCAGATTTTCATTCCTATAACCTAATGCAGAGGAT
TTAGATAGCCAGGAAACACTAGGAACCCACTTTTTCTTTTCATTTGCAAGATTTAGTGCATCTGTTGGTTATTTGTGTCT
TGAACCTCTGTTTCAACTTGGCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis