Browse Element(s) Details


Os.33215.1.S1_at

Description gb:AK101345.1
DB_XREF= gi:32986554
TID=Os.33215.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative steroid reductase DET2 (P0529H11.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034K18, full insert sequence.
FL= gb:AK101345.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6326011/113-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63220Os.35890.1.S1_at11/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63220OsAffx.23899.1.S1_at10/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63230Os.7203.2.S1_x_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63230Os.7203.1.S1_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63240Os.45898.1.S1_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.45898.1.S1_x_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.12944.1.S1_at10/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63250Os.7799.1.S1_at11/111+36983359..36987578Machado-Joseph disease, putative, expressed
LOC_Os01g63260Os.33215.1.S1_at11/111+36993814..369949853-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g63270Os.2623.1.S1_at11/111+36997170..37003327Alpha-glucan phosphorylase, H isozyme, putative, expressed
LOC_Os01g63280Os.18739.1.S1_at11/111+37010627..37013843Protein kinase domain containing protein, expressed
LOC_Os01g63290OsAffx.23901.1.S1_at11/111+37014631..37022478Major Facilitator Superfamily protein, expressed
LOC_Os01g63290Os.17497.1.S1_a_at11/111+37014631..37022478Major Facilitator Superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0003865molecular_function3-oxo-5-alpha-steroid 4-dehydrogenase activity
GO:0009917molecular_functionsterol 5-alpha reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33215.1.S1_at--712--611Chr01:36994478..36994502 (25 bp)
ATGCGGACCAACATCGCGGCGGACA
LOC_Os01g63260
Os.33215.1.S1_at--362--6711Chr01:36994753..36994777 (25 bp)
GTTCGTCCCGTACATCTACTGATTC
LOC_Os01g63260
Os.33215.1.S1_at--860--9531Chr01:36994767..36994791 (25 bp)
TCTACTGATTCCTCTGTTATTGCTG
LOC_Os01g63260
Os.33215.1.S1_at--597--71Chr01:36994785..36994809 (25 bp)
ATTGCTGATGGATACGTATCGGCCA
LOC_Os01g63260
Os.33215.1.S1_at--540--10131Chr01:36994801..36994825 (25 bp)
TATCGGCCAGGGAGTGATGCGCATT
LOC_Os01g63260
Os.33215.1.S1_at--234--6111Chr01:36994812..36994836 (25 bp)
GAGTGATGCGCATTGTGCTTCACCT
LOC_Os01g63260
Os.33215.1.S1_at--918--7311Chr01:36994826..36994850 (25 bp)
GTGCTTCACCTCGAAACAGCTTTTG
LOC_Os01g63260
Os.33215.1.S1_at--351--6571Chr01:36994850..36994874 (25 bp)
GATTCATACTGTTGGCATGCGCATG
LOC_Os01g63260
Os.33215.1.S1_at--671--3531Chr01:36994865..36994889 (25 bp)
CATGCGCATGTGGTTCTGTTGGATT
LOC_Os01g63260
Os.33215.1.S1_at--79--691Chr01:36994899..36994923 (25 bp)
ATGAGCCGTATCGTGGCTGTTTGTC
LOC_Os01g63260
Os.33215.1.S1_at--645--10251Chr01:36994918..36994944 (25 bp)
TTTGTCCCGCATCTGTCTGGTTCTA
LOC_Os01g63260
Target Sequence 
ATGCGGACCAACATCGCGGCGGACAAGGCGCTCCTGAGGCTGAAGGAGGCCGGGAAAGGGTACCAGATTCCCCGCGGCGG
GCTGTTCGACGTGGTCACCTGCCCCAACTACTTCGGCGAGGCCGTGGAGTGGCTCGGCTACGCGCTGGTGGCGTGGACGC
CGGCGGCCTGGGCCTTCTTCCTCTACACCTGCTCCAACCTCGGGCCGAGGGCCAGGGATCACCGCCGGTGGTACGTCGGC
ANGTTCGGCGACAAGTACCCGGCGTCGCGCAAGGCGTTCGTCCCGTACATCTACTGATTCCTCTGTTATTGCTGATGGAT
ACGTATCGGCCAGGGAGTGATGCGCATTGTGCTTCACCTCGAAACAGCTTTTGATTCATACTGTTGGCATGCGCATGTGG
TTCTGTTGGATTGGAATAAAAATGAGCCGTATCGTGGCTGTTTGTCCCGCATCTGTCTGGTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis