Browse Element(s) Details


OsAffx.23901.1.S1_at

Description gb:NM_190638.1
DB_XREF= gi:34908359
GEN=P0529H11.33
TID=OsAffx.23901.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0529H11.33 (P0529H11.33), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6329011/11Major Facilitator Superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63260Os.33215.1.S1_at11/111+36993814..369949853-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g63270Os.2623.1.S1_at11/111+36997170..37003327Alpha-glucan phosphorylase, H isozyme, putative, expressed
LOC_Os01g63280Os.18739.1.S1_at11/111+37010627..37013843Protein kinase domain containing protein, expressed
LOC_Os01g63290OsAffx.23901.1.S1_at11/111+37014631..37022478Major Facilitator Superfamily protein, expressed
LOC_Os01g63290Os.17497.1.S1_a_at11/111+37014631..37022478Major Facilitator Superfamily protein, expressed
LOC_Os01g63310OsAffx.23901.2.S1_s_at11/111+37023857..37025812expressed protein
LOC_Os01g63320Os.14491.2.S1_x_at3/111+37030936..37031925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63320Os.47463.1.S1_x_at3/111+37030936..37031925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63330NANA1+37032030..37035946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63340NANA1+37037260..37041462transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63354Os.33474.1.S1_at11/111+37044837..37050010ELM2 domain containing protein, expressed
LOC_Os01g63354Os.18878.1.S1_at3/111+37044837..37050010ELM2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008514molecular_functionorganic anion transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23901.1.S1_at--1093--5271Chr01:37022193..37022217 (25 bp)
GAATGTGTCCCATGTTTTCGGTCGA
LOC_Os01g63290
OsAffx.23901.1.S1_at--312--5771Chr01:37022170..37022194 (25 bp)
GACGTACTAGTAGCAGAGTCCCCTG
LOC_Os01g63290
OsAffx.23901.1.S1_at--954--8071Chr01:37022135..37022159 (25 bp)
GGAGCTATGCTACGTCATCAATCAG
LOC_Os01g63290
OsAffx.23901.1.S1_at--797--3571Chr01:37022102..37022126 (25 bp)
CATATTCGTAGACATGGCCTGCTGA
LOC_Os01g63290
OsAffx.23901.1.S1_at--820--3011Chr01:37022078..37022102 (25 bp)
AATGCAGGCTGCTGTTTTGTGTCAT
LOC_Os01g63290
OsAffx.23901.1.S1_at--248--6571Chr01:37021941..37021965 (25 bp)
GATTCTCGATCAGATGGCTCGTGCA
LOC_Os01g63290
OsAffx.23901.1.S1_at--517--4251Chr01:37021895..37021919 (25 bp)
CCGTGTACCGCCGAGGATATGCAAT
LOC_Os01g63290
OsAffx.23901.1.S1_at--201--3211Chr01:37021616..37021898 (25 bp)
CAATGGCATGTCTGGCACTGTAGCT
LOC_Os01g63290
OsAffx.23901.1.S1_at--804--271Chr01:37021537..37021561 (25 bp)
ATATGGCGATAGTACTGCCCGCCGA
LOC_Os01g63290
OsAffx.23901.1.S1_at--712--2191Chr01:37021480..37021504 (25 bp)
ACACAAGTGTTGTCCGACCATGTCA
LOC_Os01g63290
OsAffx.23901.1.S1_at--647--3751Chr01:37021452..37021476 (25 bp)
CTCAGTCCTCACTAAGCTTATTTCT
LOC_Os01g63290
Target Sequence 
GAATGTGTCCCATGTTTTCGGTCGACGTACTAGTAGCAGAGTCCCCTGCGGGCTGCATGGAGCTATGCTACGTCATCAAT
CAGAGACGGGCCATATTCGTAGACATGGCCTGCTGAATGCAGGCTGCTGTTTTGTGTCATTGCCTGGGGTTGCATGGAAA
TTCCGATTCTGCAATCAGAGTGACACGATAAAACGAACGAAACAAACAAGTCGTACTACTCCGAATTTTTCTTTCTCCAT
GCGTGGAGCATTGATTCTCGATCAGATGGCTCGTGCAAACTGCACGCATCGGACTATTCCGTGTACCGCCGAGGATATGC
AATGGCATGTCTGGCACTGTAGCTGCATGCACTGCACTGTGCCACTGTCGCATGGCAGCACGGTGAGAAACAAAGCAGAT
ATGGCGATAGTACTGCCCGCCGAGAAGGTCGATCGATGTGTGGAGACATTCGATGACACAAGTGTTGTCCGACCATGTCA
CTTCTCAGTCCTCACTAAGCTTATTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis