Browse Element(s) Details


Os.18878.1.S1_at

Description gb:BM418946
DB_XREF= gi:18385747
DB_XREF=R007A11
CLONE=R007A11
TID=Os.18878.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18878 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g633543/11ELM2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63290OsAffx.23901.1.S1_at11/111+37014631..37022478Major Facilitator Superfamily protein, expressed
LOC_Os01g63290Os.17497.1.S1_a_at11/111+37014631..37022478Major Facilitator Superfamily protein, expressed
LOC_Os01g63310OsAffx.23901.2.S1_s_at11/111+37023857..37025812expressed protein
LOC_Os01g63320Os.14491.2.S1_x_at3/111+37030936..37031925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63320Os.47463.1.S1_x_at3/111+37030936..37031925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63330NANA1+37032030..37035946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63340NANA1+37037260..37041462transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63354Os.33474.1.S1_at11/111+37044837..37050010ELM2 domain containing protein, expressed
LOC_Os01g63354Os.18878.1.S1_at3/111+37044837..37050010ELM2 domain containing protein, expressed
LOC_Os01g63370OsAffx.11711.1.S1_at11/111+37052175..37053015hypothetical protein
LOC_Os01g63380OsAffx.11737.1.S1_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63380OsAffx.11737.1.S1_x_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63380OsAffx.11737.2.S1_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63389OsAffx.23902.2.S1_at11/111+37057557..37057880hypothetical protein
LOC_Os01g63400Os.32279.4.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63400Os.32279.2.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63410Os.32279.1.S1_at11/111+37062800..37064056expressed protein
LOC_Os01g63420Os.11384.1.S1_at11/111+37073656..37077825Coronatine-insensitive protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006259biological_processDNA metabolism
GO:0006265biological_processDNA topological change
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003918molecular_functionDNA topoisomerase (ATP-hydrolyzing) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18878.1.S1_at--767--9311NONE
TCCCACTGTGGTCACTTAGTCTGAT
NONE
Os.18878.1.S1_at--504--10771NONE
TTGGATAAAGTGACCGTTCCCTTTG
NONE
Os.18878.1.S1_at--249--9831NONE
TAAAGTGACCGTTCCCTTTGCTAGA
NONE
Os.18878.1.S1_at--739--8911NONE
TGACCGTTCCCTTTGCTAGAACACA
NONE
Os.18878.1.S1_at--478--10031NONE
TAGAACACATCCCTTCTCAGTGAAA
NONE
Os.18878.1.S1_at--340--2051NONE
ACTTATTTGAATGCCAACCACTTCT
NONE
Os.18878.1.S1_at--505--10771NONE
TTGGAAGGGCCCATGTGTCCCTTTA
NONE
Os.18878.1.S1_at--735--4171NONE
CCCATGTGTCCCTTTAGCAAGCTTT
NONE
Os.18878.1.S1_at--1062--10471Chr01:37044885..37044909 (25 bp)
TTAACTCCAGTTTTAATAGGATCTC
LOC_Os01g63354
Os.18878.1.S1_at--135--3111Chr01:37044871..37044895 (25 bp)
AATAGGATCTCTTCTTGTGTTAATA
LOC_Os01g63354
Os.18878.1.S1_at--409--7971Chr01:37044867..37044891 (25 bp)
GGATCTCTTCTTGTGTTAATATTTA
LOC_Os01g63354
Target Sequence 
TCCCACTGTGGTCACTTAGTCTGATCTTGGAAGATATTTGGATAAAGTGACCGTTCCCTTTGCTAGAACACATCCCTTCT
CAGTGAAACTTATTTGAATGCCAACCACTTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATC
TGATCTGAATTGTTTCCCCTTGTACACGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACCAATGGTCTGGAACC
TTTCTTATTATTGAGACTTGGAAGGGCCCATGTGTCCCTTTAGCAAGCTTTTTTGCAATGCATATCTATCGTTCTGTTTT
TTTTTTCTTTTAACTCCAGTTTTAATAGGATCTCTTCTTGTGTTAATATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis