Browse Element(s) Details


OsAffx.11711.1.S1_at

Description tigr:9629.m06267
TID=OsAffx.11711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6337011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63320Os.14491.2.S1_x_at3/111+37030936..37031925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63320Os.47463.1.S1_x_at3/111+37030936..37031925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63330NANA1+37032030..37035946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63340NANA1+37037260..37041462transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63354Os.33474.1.S1_at11/111+37044837..37050010ELM2 domain containing protein, expressed
LOC_Os01g63354Os.18878.1.S1_at3/111+37044837..37050010ELM2 domain containing protein, expressed
LOC_Os01g63370OsAffx.11711.1.S1_at11/111+37052175..37053015hypothetical protein
LOC_Os01g63380OsAffx.11737.1.S1_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63380OsAffx.11737.1.S1_x_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63380OsAffx.11737.2.S1_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63389OsAffx.23902.2.S1_at11/111+37057557..37057880hypothetical protein
LOC_Os01g63400Os.32279.4.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63400Os.32279.2.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63410Os.32279.1.S1_at11/111+37062800..37064056expressed protein
LOC_Os01g63420Os.11384.1.S1_at11/111+37073656..37077825Coronatine-insensitive protein 1, putative, expressed
LOC_Os01g63430OsAffx.11713.3.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430OsAffx.11713.1.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430Os.10263.1.S1_at10/111+37077786..37080821hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11711.1.S1_at--1077--8471Chr01:37052211..37052235 (25 bp)
TGGCGTGGTGCTACAGTATTTGTGC
LOC_Os01g63370
OsAffx.11711.1.S1_at--945--2331Chr01:37052236..37052260 (25 bp)
AAAGCACAACGTCGTGGTCCTTTCT
LOC_Os01g63370
OsAffx.11711.1.S1_at--1042--8591Chr01:37052250..37052274 (25 bp)
TGGTCCTTTCTTGGCCCGCTGACAT
LOC_Os01g63370
OsAffx.11711.1.S1_at--507--5651Chr01:37052270..37052294 (25 bp)
GACATGTCGGCGTCACCAAAAGAAG
LOC_Os01g63370
OsAffx.11711.1.S1_at--218--8011Chr01:37052588..37052612 (25 bp)
GGAGGATTTGAACCAAACGCTGCAA
LOC_Os01g63370
OsAffx.11711.1.S1_at--390--3151Chr01:37052613..37052849 (25 bp)
AATTCATGTGTTTAGTGGTGTCAGA
LOC_Os01g63370
OsAffx.11711.1.S1_at--481--8731Chr01:37052843..37052867 (25 bp)
TGTCAGATGTGCAATATAGTACCCA
LOC_Os01g63370
OsAffx.11711.1.S1_at--832--231Chr01:37052856..37052880 (25 bp)
ATATAGTACCCACAGCCATCTTGAG
LOC_Os01g63370
OsAffx.11711.1.S1_at--674--3611Chr01:37052875..37052899 (25 bp)
CTTGAGACTCAAGCTCTGGAAATAA
LOC_Os01g63370
OsAffx.11711.1.S1_at--543--8451Chr01:37052931..37052955 (25 bp)
GGCCAAGAGGCCACGGGCATCAGAT
LOC_Os01g63370
OsAffx.11711.1.S1_at--792--4531Chr01:37052957..37052981 (25 bp)
GCCCCGACAAGGACGCATCAGATTT
LOC_Os01g63370
Target Sequence 
TGGCGTGGTGCTACAGTATTTGTGCAAAGCACAACGTCGTGGTCCTTTCTTGGCCCGCTGACATGTCGGCGTCACCAAAA
GAAGATTGATATAAACAGGACTTTCTTTAGAATTGAGGAATTTCAAAGGAATTATGGAGGATTTGAACCAAACGCTGCAA
AATTCATGTGTTTAGTGGTGTCAGATGTGCAATATAGTACCCACAGCCATCTTGAGACTCAAGCTCTGGAAATAAACCTT
AGTAGAATTGGGGGCAAAGTGGAAGAGGCCAAGAGGCCACGGGCATCAGATGGCCCCGACAAGGACGCATCAGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis