Browse Element(s) Details


Os.11384.1.S1_at

Description gb:AY168645.1
DB_XREF= gi:37359392
TID=Os.11384.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11384 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) COI1 mRNA, complete cds.
PROD=COI1
FL= gb:AY168645.1 gb:AK121543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6342011/11Coronatine-insensitive protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63354Os.33474.1.S1_at11/111+37044837..37050010ELM2 domain containing protein, expressed
LOC_Os01g63354Os.18878.1.S1_at3/111+37044837..37050010ELM2 domain containing protein, expressed
LOC_Os01g63370OsAffx.11711.1.S1_at11/111+37052175..37053015hypothetical protein
LOC_Os01g63380OsAffx.11737.1.S1_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63380OsAffx.11737.1.S1_x_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63380OsAffx.11737.2.S1_at11/111+37054596..37057252transposon protein, putative, unclassified
LOC_Os01g63389OsAffx.23902.2.S1_at11/111+37057557..37057880hypothetical protein
LOC_Os01g63400Os.32279.4.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63400Os.32279.2.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63410Os.32279.1.S1_at11/111+37062800..37064056expressed protein
LOC_Os01g63420Os.11384.1.S1_at11/111+37073656..37077825Coronatine-insensitive protein 1, putative, expressed
LOC_Os01g63430OsAffx.11713.3.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430OsAffx.11713.1.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430Os.10263.1.S1_at10/111+37077786..37080821hypothetical protein
LOC_Os01g63444Os.30588.4.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.4.S1_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.1.S1_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.5.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.2.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.3.S1_x_at10/111+37083746..37089766expressed protein
LOC_Os01g63460Os.42406.1.S1_at11/111+37090476..37092143myb family transcription factor, putative, expressed
LOC_Os01g63470Os.17214.1.S1_at11/111+37097867..37099284C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006952biological_processdefense response
GO:0009625biological_processresponse to insect
GO:0009733biological_processresponse to auxin stimulus
GO:0009861biological_processjasmonic acid and ethylene-dependent systemic resistance
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0045014biological_processnegative regulation of transcription by glucose
GO:0000151cellular_componentubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11384.1.S1_at--1103--31Chr01:37077138..37077162 (25 bp)
ATTGATCCGTTTCGCAGTGGGCTGC
LOC_Os01g63420
Os.11384.1.S1_at--135--1111Chr01:37077153..37077177 (25 bp)
AGTGGGCTGCACCAACCTTCAGAAG
LOC_Os01g63420
Os.11384.1.S1_at--365--5491Chr01:37077321..37077345 (25 bp)
GAACATCGAGTTTACACCTCCGAGC
LOC_Os01g63420
Os.11384.1.S1_at--418--1731Chr01:37077336..37077360 (25 bp)
ACCTCCGAGCCCTGAGAGTTTTAAT
LOC_Os01g63420
Os.11384.1.S1_at--507--2611Chr01:37077380..37077404 (25 bp)
AACCCTGTGTGGATAGCCATGCTCA
LOC_Os01g63420
Os.11384.1.S1_at--159--631Chr01:37077398..37077422 (25 bp)
ATGCTCAGGTTCTTGCCTACTATTC
LOC_Os01g63420
Os.11384.1.S1_at--606--3631Chr01:37077465..37077544 (25 bp)
CTTGCATCCTGCGTGATTGTTTGTA
LOC_Os01g63420
Os.11384.1.S1_at--253--3251Chr01:37077493..37077517 (25 bp)
CAAGCTGTGTATACCTTCCTATCTA
LOC_Os01g63420
Os.11384.1.S1_at--390--8731Chr01:37077552..37077576 (25 bp)
TGTAAGAACCTTAGCTTGCCACCTT
LOC_Os01g63420
Os.11384.1.S1_at--70--6611Chr01:37077580..37077604 (25 bp)
GATTGTGCCCGAATAAGCTACTACT
LOC_Os01g63420
Os.11384.1.S1_at--479--6651Chr01:37077636..37077660 (25 bp)
GTTGTTGTCACTTGTTCTACGTATC
LOC_Os01g63420
Target Sequence 
ATTGATCCGTTTCGCAGTGGGCTGCACCAACCTTCAGAAGCTTGAATTGAGAAGCTGCTGCTTCAGCGAGCGAGCTTTGT
CCCTCGCTGTACTGCAGATGCCCTCCCTGAGATACATATGGGTGCAAGGATACAGAGCATCTCAAACAGGCCTTGACCTC
CTGCTCATGGCCAGGCCTTTCTGGAACATCGAGTTTACACCTCCGAGCCCTGAGAGTTTTAATCATATGACAGAAGATGG
AGAACCCTGTGTGGATAGCCATGCTCAGGTTCTTGCCTACTATTCCCTTGCTGGAAGGAGGTCTGACTGCCCTCAGTGGG
TGATCCCCTTGCATCCTGCGTGATTGTTTGTAAATATGTCAAGCTGTGTATACCTTCCTATCTATCCCTGGGGCATAAGC
ATGGCCTTGTATGGTTATTGTAAGAACCTTAGCTTGCCACCTTTGTGATTGTGCCCGAATAAGCTACTACTAGTACTTTA
GCTGGGGTCTATAGTGCAATAAGTTGTTGTCACTTGTTCTACGTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis