Browse Element(s) Details


Os.30588.3.S1_x_at

Description gb:AK107747.1
DB_XREF= gi:32992956
TID=Os.30588.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30588 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0529E05.18 (P0529E05.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-H05, full insert sequence.
FL= gb:AK107747.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6344410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63400Os.32279.4.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63400Os.32279.2.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63410Os.32279.1.S1_at11/111+37062800..37064056expressed protein
LOC_Os01g63420Os.11384.1.S1_at11/111+37073656..37077825Coronatine-insensitive protein 1, putative, expressed
LOC_Os01g63430OsAffx.11713.3.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430OsAffx.11713.1.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430Os.10263.1.S1_at10/111+37077786..37080821hypothetical protein
LOC_Os01g63444Os.30588.4.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.4.S1_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.1.S1_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.5.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.2.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.3.S1_x_at10/111+37083746..37089766expressed protein
LOC_Os01g63460Os.42406.1.S1_at11/111+37090476..37092143myb family transcription factor, putative, expressed
LOC_Os01g63470Os.17214.1.S1_at11/111+37097867..37099284C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30588.3.S1_x_at--888--9451Chr01:37084160..37084184 (25 bp)
TCTGGTGCGTTGCTAACCTACAGGC
LOC_Os01g63444
Os.30588.3.S1_x_at--119--6051NONE
GAGATCTCTAGCATTGAGCGCTGCC
NONE
Os.30588.3.S1_x_at--702--4931Chr01:37084297..37084321 (25 bp)
GCTTGTGCCTGAAACCTGTTTGTTA
LOC_Os01g63444
Os.30588.3.S1_x_at--953--10771Chr01:37084316..37084340 (25 bp)
TTGTTAAAATGCGTCCGTGCGTCCG
LOC_Os01g63444
Os.30588.3.S1_x_at--956--7991Chr01:37084408..37084432 (25 bp)
GGATGTAACATCACTTGCTCGTATC
LOC_Os01g63444
Os.30588.3.S1_x_at--857--8151Chr01:37084448..37084472 (25 bp)
GGAAACGGTCTACACGAGCACATAG
LOC_Os01g63444
Os.30588.3.S1_x_at--538--7791Chr01:37084476..37084500 (25 bp)
GGTCCTTCATCTCAAGTGGTGCTAA
LOC_Os01g63444
Os.30588.3.S1_x_at--919--1091Chr01:37084490..37084514 (25 bp)
AGTGGTGCTAATGCTTGTCTTGCCG
LOC_Os01g63444
Os.30588.3.S1_x_at--110--8711Chr01:37084505..37084529 (25 bp)
TGTCTTGCCGTTTCGAGTGGAACCG
LOC_Os01g63444
Os.30588.3.S1_x_at--901--5251Chr01:37084531..37084555 (25 bp)
GAATCCCTGCACCTGTTGGATGTGA
LOC_Os01g63444
Os.30588.3.S1_x_at--370--10851Chr01:37084546..37084570 (25 bp)
TTGGATGTGAACTGCCCTATACGCT
LOC_Os01g63444
Target Sequence 
TCTGGTGCGTTGCTAACCTACAGGCCCGGGGACGGCGAGGGCGTCCTCACGGAGTCACGGCCACCCTCTCGAGGGCTCGA
CTCCCCCTGATCAGGAAATCTGATGGCACGGTGAGATCTCTAGCATTGAGCGCTGCCGCTTGTGCCTGAAACCTGTTTGT
TAAAATGCGTCCGTGCGTCCGCGAGGCGGTTGAGGATGTGCTTGCCTTCCCTGCACCCGTCTGGAGGAAAGTTAGTGCTC
GCATGGGTGGATGTAACATCACTTGCTCGTATCAAGTGCTGGAGAAGTGGAAACGGTCTACACGAGCACATAGCCCGGTC
CTTCATCTCAAGTGGTGCTAATGCTTGTCTTGCCGTTTCGAGTGGAACCGGGAATCCCTGCACCTGTTGGATGTGAACTG
CCCTATACGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30588.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis