Browse Element(s) Details


Os.30588.4.S1_x_at

Description gb:NM_190650.1
DB_XREF= gi:34908383
GEN=P0529E05.18
TID=Os.30588.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.30588 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0529E05.18 (P0529E05.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0529E05.18 (P0529E05.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6344411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63400Os.32279.4.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63400Os.32279.2.S1_x_at11/111+37059685..37064252pentatricopeptide, putative, expressed
LOC_Os01g63410Os.32279.1.S1_at11/111+37062800..37064056expressed protein
LOC_Os01g63420Os.11384.1.S1_at11/111+37073656..37077825Coronatine-insensitive protein 1, putative, expressed
LOC_Os01g63430OsAffx.11713.3.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430OsAffx.11713.1.S1_at11/111+37077786..37080821hypothetical protein
LOC_Os01g63430Os.10263.1.S1_at10/111+37077786..37080821hypothetical protein
LOC_Os01g63444Os.30588.4.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.4.S1_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.1.S1_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.5.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.2.S1_x_at11/111+37083746..37089766expressed protein
LOC_Os01g63444Os.30588.3.S1_x_at10/111+37083746..37089766expressed protein
LOC_Os01g63460Os.42406.1.S1_at11/111+37090476..37092143myb family transcription factor, putative, expressed
LOC_Os01g63470Os.17214.1.S1_at11/111+37097867..37099284C2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30588.4.S1_x_at--553--5491Chr01:37087759..37087783 (25 bp)
GAACATACATCTTAGCTGCTGGATT
LOC_Os01g63444
Os.30588.4.S1_x_at--692--7611Chr01:37087805..37087829 (25 bp)
GGGAATCACTGACTACCTGGAGATA
LOC_Os01g63444
Os.30588.4.S1_x_at--319--8051Chr01:37087823..37087847 (25 bp)
GGAGATAACGATTCCTCTGGCATAT
LOC_Os01g63444
Os.30588.4.S1_x_at--790--8491Chr01:37087860..37087884 (25 bp)
TGGCTTCAGCCAGTTGTATCAATTG
LOC_Os01g63444
Os.30588.4.S1_x_at--1040--9111Chr01:37087901..37087925 (25 bp)
TGCTGAATGCTCGAATACCACCAAG
LOC_Os01g63444
Os.30588.4.S1_x_at--861--5531Chr01:37087926..37087950 (25 bp)
GAAACTAGTTTCCAATCGGGCATGA
LOC_Os01g63444
Os.30588.4.S1_x_at--717--6271Chr01:37087994..37088018 (25 bp)
GATGTCATCGATGCGTTGTCAATAC
LOC_Os01g63444
Os.30588.4.S1_x_at--805--9851Chr01:37088089..37088113 (25 bp)
TACAAAATCCGGATTGCACTTCCCT
LOC_Os01g63444
Os.30588.4.S1_x_at--70--6591Chr01:37088100..37088124 (25 bp)
GATTGCACTTCCCTTAAACAACTTG
LOC_Os01g63444
Os.30588.4.S1_x_at--831--10471Chr01:37088113..37088137 (25 bp)
TTAAACAACTTGCAGGCTCCCCAAC
LOC_Os01g63444
Os.30588.4.S1_x_at--1006--5191Chr01:37088212..37088236 (25 bp)
GCAATATTTCTATCTGCTACCCCAT
LOC_Os01g63444
Target Sequence 
GAACATACATCTTAGCTGCTGGATTATTGCTTGGCATCAGGGCTGTGGGAATCACTGACTACCTGGAGATAACGATTCCT
CTGGCATATTTATCTGTGGCATGGCTTCAGCCAGTTGTATCAATTGCGTCAGAACATGGGAATGCTGAATGCTCGAATAC
CACCAAGGAAACTAGTTTCCAATCGGGCATGAGCAGAATATGTTCAGCAACCTCTATAATTCAATGGAACAAGCAGATGT
CATCGATGCGTTGTCAATACATACTGACATGTGAATTACAAAATCCGGATTGCACTTCCCTTAAACAACTTGCAGGCTCC
CCAACGGGAGACGACATCTACCTGCCCAGTACAATAATTCTGCATCTATGCAAATATGCAATAGTCCATGTTGAAGCATG
CAATATTTCTATCTGCTACCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30588.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis