Browse Element(s) Details

Os.17497.1.S1_a_at

Description

gb:AK063954.1
DB_XREF= gi:32973972
TID=Os.17497.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0529H11.31 (P0529H11.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-F11, full insert sequence.
FL= gb:AK063954.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g63290	11/11	Major Facilitator Superfamily protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g63260	Os.33215.1.S1_at	11/11	1	+	36993814..36994985	3-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g63270	Os.2623.1.S1_at	11/11	1	+	36997170..37003327	Alpha-glucan phosphorylase, H isozyme, putative, expressed
LOC_Os01g63280	Os.18739.1.S1_at	11/11	1	+	37010627..37013843	Protein kinase domain containing protein, expressed
LOC_Os01g63290	OsAffx.23901.1.S1_at	11/11	1	+	37014631..37022478	Major Facilitator Superfamily protein, expressed
LOC_Os01g63290	Os.17497.1.S1_a_at	11/11	1	+	37014631..37022478	Major Facilitator Superfamily protein, expressed
LOC_Os01g63310	OsAffx.23901.2.S1_s_at	11/11	1	+	37023857..37025812	expressed protein
LOC_Os01g63320	Os.14491.2.S1_x_at	3/11	1	+	37030936..37031925	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63320	Os.47463.1.S1_x_at	3/11	1	+	37030936..37031925	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63330	NA	NA	1	+	37032030..37035946	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63340	NA	NA	1	+	37037260..37041462	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63354	Os.33474.1.S1_at	11/11	1	+	37044837..37050010	ELM2 domain containing protein, expressed
LOC_Os01g63354	Os.18878.1.S1_at	3/11	1	+	37044837..37050010	ELM2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0016020	cellular_component	membrane
GO:0005351	molecular_function	sugar porter activity
GO:0008514	molecular_function	organic anion transporter activity
GO:0015144	molecular_function	carbohydrate transporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.17497.1.S1_a_at--84--601	1	Chr01:37015202..37015226 (25 bp)	GAGAGCGTGTTGATTTTGATGGCAC	LOC_Os01g63290
Os.17497.1.S1_a_at--1021--887	1	Chr01:37015186..37015210 (25 bp)	TGATGGCACTGGCTAGCGCCTAAGA	LOC_Os01g63290
Os.17497.1.S1_a_at--50--729	1	Chr01:37015111..37015135 (25 bp)	GTGCCATCATCTTCTGGTATGCTAT	LOC_Os01g63290
Os.17497.1.S1_a_at--286--679	1	Chr01:37015056..37015080 (25 bp)	GTTATGACGTCTACCGATTATGGCA	LOC_Os01g63290
Os.17497.1.S1_a_at--72--265	1	Chr01:37014989..37015013 (25 bp)	AACCAGCTACTGTGATCATTCGAAT	LOC_Os01g63290
Os.17497.1.S1_a_at--458--521	1	Chr01:37014968..37014992 (25 bp)	GAATTTTCGTACTATGGAGACTGGA	LOC_Os01g63290
Os.17497.1.S1_a_at--521--391	1	Chr01:37014891..37014915 (25 bp)	CTGGAGAGTCCAAAATGTGAGTCAA	LOC_Os01g63290
Os.17497.1.S1_a_at--395--551	1	Chr01:37014833..37014857 (25 bp)	GAAAATGATTGGCACTTGACAAGAA	LOC_Os01g63290
Os.17497.1.S1_a_at--1115--623	1	Chr01:37014750..37014774 (25 bp)	GATGGAATACGTTTTAGTCCTTTAT	LOC_Os01g63290
Os.17497.1.S1_a_at--643--895	1	Chr01:37014702..37014726 (25 bp)	TGACTCAACAGTCATAGCCTCATAG	LOC_Os01g63290
Os.17497.1.S1_a_at--121--29	1	Chr01:37014681..37014705 (25 bp)	ATAGGGCACCTTCGACTTTGTAAAT	LOC_Os01g63290

Target Sequence

GAGAGCGTGTTGATTTTGATGGCACTGGCTAGCGCCTAAGAGAAAATCTACAGTTGCTATCCTAGAATATGATGATTGGT
TGGAGAATTATGTGCCATCATCTTCTGGTATGCTATTGGAAAGCTCCATGCACNNNANNANACAGAGTTATGACGTCTAC
CGATTATGGCATTGTGCTTCCATTTANGTAGGGGTAGCAGTGAAGAAAAAANTGGAACCAGCTACTGTGATCATTCGAAT
TTTCGTACTATGGAGACTGGAGAGTCCAAAATGTGAGTCAAGGATANCTGAAGCAGTTACACAGAACTAATGACTGGAGA
GTCCNAAATGTGAGTCAAGGATAGNGTGTGGTAATATTANTTGTAGAGATCTGAAAATGATTGGCACTTGACAAGAATTA
AGCTTGGAATCAAGCACGNTTTGATGAGGGTTGTCAAGTTTTTAAATGGAAAGTAGATGGAATACGTTTTAGTCCTTTAT
AGTTTTATAGTTAATAGAAAANATGACTCAACAGTCATAGCCTCATAGGGCACCTTCGACTTTGTAAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis