Browse Element(s) Details


Os.7203.1.S1_at

Description gb:AK100337.1
DB_XREF= gi:32985546
TID=Os.7203.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative axi 1(auxin-independent growth promoter) protein (P0529H11.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081E01, full insert sequence.
FL= gb:AK100337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6323011/11Plant protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63180Os.42421.1.S1_at11/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63180Os.18847.1.S1_at6/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63190Os.14830.1.S1_a_at11/111+36949678..36954511Multicopper oxidase family protein, expressed
LOC_Os01g63200Os.42420.1.S1_at11/111+36961180..36963829Multicopper oxidase family protein, expressed
LOC_Os01g63210Os.11253.1.S1_at11/111+36966475..36967417SOUL heme-binding family protein, putative, expressed
LOC_Os01g63220Os.35890.1.S1_at11/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63220OsAffx.23899.1.S1_at10/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63230Os.7203.2.S1_x_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63230Os.7203.1.S1_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63240Os.45898.1.S1_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.45898.1.S1_x_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.12944.1.S1_at10/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63250Os.7799.1.S1_at11/111+36983359..36987578Machado-Joseph disease, putative, expressed
LOC_Os01g63260Os.33215.1.S1_at11/111+36993814..369949853-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g63270Os.2623.1.S1_at11/111+36997170..37003327Alpha-glucan phosphorylase, H isozyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7203.1.S1_at--836--31Chr01:36970903..36970927 (25 bp)
ATTGTCTTCAAAAGTTCCAACCACT
LOC_Os01g63230
Os.7203.1.S1_at--395--2651Chr01:36970885..36970909 (25 bp)
AACCACTTCCCTGATGTAGCATGGA
LOC_Os01g63230
Os.7203.1.S1_at--762--6551Chr01:36970786..36970810 (25 bp)
GATTAACAGTGTATGCAGCCATCAT
LOC_Os01g63230
Os.7203.1.S1_at--747--1031Chr01:36970736..36970760 (25 bp)
AGGTCCATTTATTATCGTCTGAGAT
LOC_Os01g63230
Os.7203.1.S1_at--811--6031Chr01:36970716..36970740 (25 bp)
GAGATCTGCATCTCCAGTTGATTAT
LOC_Os01g63230
Os.7203.1.S1_at--3--2351Chr01:36970604..36970628 (25 bp)
AAAGAATACCTTTTTTAGTGCATGT
LOC_Os01g63230
Os.7203.1.S1_at--686--7331Chr01:36970587..36970611 (25 bp)
GTGCATGTATGTAGTTCACACTTCA
LOC_Os01g63230
Os.7203.1.S1_at--1082--2171Chr01:36970561..36970585 (25 bp)
ACACTCCATATGTACAGTCTGTCCT
LOC_Os01g63230
Os.7203.1.S1_at--304--7031Chr01:36970550..36970574 (25 bp)
GTACAGTCTGTCCTCTTTTTATATT
LOC_Os01g63230
Os.7203.1.S1_at--793--6871Chr01:36970523..36970547 (25 bp)
GTATTCATCCCAAAATTGCAGCTTT
LOC_Os01g63230
Os.7203.1.S1_at--202--5071Chr01:36970506..36970530 (25 bp)
GCAGCTTTATTCAGATAGGCATGTA
LOC_Os01g63230
Target Sequence 
ATTGTCTTCAAAAGTTCCAACCACTTCCCTGATGTAGCATGGATATACAAACACAAAATNTTNTAACAAAGAATTACACT
GGTAATGGACAGGGACAGCCNACAGATAATTTTCCTAGATTAACAGTGTATGCAGCCATCATTCATAGAAAAGGAAGCAG
GAGGGGCAGGTCCATTTATTATCGTCTGAGATCTGCATCTCCAGTTGATTATTTATTCAAGTATACAGGAAACGGAAGAG
TAAAAAAGATTTTAAATACCAGCAAAGCATAGATGTGCCAGAAGTGATGGGATAGCTTGAAAGAATACCTTTTTTAGTGC
ATGTATGTAGTTCACACTTCACACACTCCATATGTACAGTCTGTCCTCTTTTTATATTTTGTATTCATCCCAAAATTGCA
GCTTTATTCAGATAGGCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis