Browse Element(s) Details


Os.14830.1.S1_a_at

Description gb:AK109431.2
DB_XREF= gi:42821745
TID=Os.14830.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.14830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative laccase (P0529H11.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-A04, full insert sequence.
FL= gb:AK109431.2 gb:AK065154.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6319011/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63150Os.42422.1.S1_at11/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.23640.3.S1_x_at6/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.22659.1.A1_at2/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.23640.1.S1_x_at1/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63160Os.30620.1.S1_at11/111+36933384..36934984Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g63170Os.38395.4.S1_x_at11/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.3.S1_x_at10/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.1.S1_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.2.S1_x_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63180Os.42421.1.S1_at11/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63180Os.18847.1.S1_at6/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63190Os.14830.1.S1_a_at11/111+36949678..36954511Multicopper oxidase family protein, expressed
LOC_Os01g63200Os.42420.1.S1_at11/111+36961180..36963829Multicopper oxidase family protein, expressed
LOC_Os01g63210Os.11253.1.S1_at11/111+36966475..36967417SOUL heme-binding family protein, putative, expressed
LOC_Os01g63220Os.35890.1.S1_at11/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63220OsAffx.23899.1.S1_at10/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63230Os.7203.2.S1_x_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63230Os.7203.1.S1_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63240Os.45898.1.S1_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.45898.1.S1_x_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.12944.1.S1_at10/111+36979336..36981573Reticulon family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14830.1.S1_a_at--240--9431Chr01:36953857..36953881 (25 bp)
TCGGCAACTTCACGCCGGGCAACGT
LOC_Os01g63190
Os.14830.1.S1_a_at--212--2591Chr01:36953877..36953901 (25 bp)
AACGTGAGCGGCTACAACCTCGTCG
LOC_Os01g63190
Os.14830.1.S1_a_at--458--10291Chr01:36953957..36953977 (21 bp)
TTTCGTTGCCAACAATCCAGGCATG
LOC_Os01g63190
Os.14830.1.S1_a_at--891--3031Chr01:36954093..36954113 (21 bp)
AATCCAGGCATGTGGTTCTTCCATT
LOC_Os01g63190
Os.14830.1.S1_a_at--344--931Chr01:36954094..36954118 (25 bp)
AGGCATGTGGTTCTTCCATTGCCAC
LOC_Os01g63190
Os.14830.1.S1_a_at--949--2231Chr01:36954254..36954278 (25 bp)
AAATTGTAATGCACTTTCGTAGCCA
LOC_Os01g63190
Os.14830.1.S1_a_at--2--7071Chr01:36954259..36954283 (25 bp)
GTAATGCACTTTCGTAGCCAAATTT
LOC_Os01g63190
Os.14830.1.S1_a_at--1084--8891Chr01:36954263..36954287 (25 bp)
TGCACTTTCGTAGCCAAATTTTACT
LOC_Os01g63190
Os.14830.1.S1_a_at--209--4031Chr01:36954271..36954295 (25 bp)
CGTAGCCAAATTTTACTTCATATTT
LOC_Os01g63190
Os.14830.1.S1_a_at--581--7431Chr01:36954371..36954395 (25 bp)
GTGTATCATGTGTAAACTGTAAAGA
LOC_Os01g63190
Os.14830.1.S1_a_at--626--2391Chr01:36954453..36954477 (25 bp)
AAACTTCAGATTCCTTTGACTGTGT
LOC_Os01g63190
Target Sequence 
TCGGCAACTTCACGCCGGGCAACGTGAGCGGCTACAACCTCGTCGACCCGGTTTCGCGCAACACCCTCGCCGTGCCGACC
GGCGGCTGGGCCGTCATCCGTTTCGTTGCCAACAATCCAGGCATGTGGTTCTTCCATTGCCACCTTGACGCGCACGTTCC
GATGGGGCTCGGCATGGTGTTCGCGGTGGATAACGGGACGACGCCTGACTCCTTCCTCCCTCCGCCGCCTGCCGATCTGC
CGANNTGCNNNAGTGCTAGAACCTGCAAGATTCTGGCGTTGGTGTCAAATTGTAATGCACTTTCGTAGCCAAATTTTACT
TCATATTTGTTCTTGTGTTTGTGTAAATGGAGTACANGGAGGCACGAAACGAGGTAGTGCCGTTCGTTTATTTGTTCTGT
GTATGTGTATCATGTGTAAACTGTAAAGAGGTCTGTTTTTTTTTTTCCTCTCCGGGGGAACGTGTAAACTGTAAAGCAAC
AAATGTCAAACTTCAGATTCCTTTGACTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14830.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis