Browse Element(s) Details


Os.42422.1.S1_at

Description gb:NM_190617.1
DB_XREF= gi:34908317
GEN=P0529H11.12
TID=Os.42422.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42422 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0529H11.12 (P0529H11.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0529H11.12 (P0529H11.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6315011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63100NANA1+36891035..36896658retrotransposon protein, putative, unclassified
LOC_Os01g63110Os.28943.1.S1_x_at3/111+36897278..36898858retrotransposon protein, putative, unclassified
LOC_Os01g63120NANA1+36902994..36907445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63130Os.27691.2.S1_x_at1/111+36907695..36908836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g63140NANA1+36912147..36913010retrotransposon protein, putative, unclassified
LOC_Os01g63150Os.42422.1.S1_at11/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.23640.3.S1_x_at6/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.22659.1.A1_at2/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.23640.1.S1_x_at1/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63160Os.30620.1.S1_at11/111+36933384..36934984Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g63170Os.38395.4.S1_x_at11/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.3.S1_x_at10/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.1.S1_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.2.S1_x_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63180Os.42421.1.S1_at11/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63180Os.18847.1.S1_at6/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63190Os.14830.1.S1_a_at11/111+36949678..36954511Multicopper oxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42422.1.S1_at--147--9391Chr01:36926628..36926652 (25 bp)
TCGAGGACTTCATCTCGACGTGCGC
LOC_Os01g63150
Os.42422.1.S1_at--148--1952Chr04:29173133..29173157 (25 bp)
ACGGCCGAGAGGAATTGCCGCATCT
NONE
Os.42422.1.S1_at--946--4151Chr01:36926348..36926372 (25 bp)
CGCCGAGACCTGGTTCAAGATCAGG
LOC_Os01g63150
Os.42422.1.S1_at--55--9491Chr01:36924819..36924843 (25 bp)
TCTGCGAAATCTGTGGCTCAACTGC
LOC_Os01g63150
Os.42422.1.S1_at--966--1011Chr01:36924782..36924806 (25 bp)
AGGTATCGGTGATGCCGAGTTCATC
LOC_Os01g63150
Os.42422.1.S1_at--43--8971Chr01:36924746..36924770 (25 bp)
TGAATCAAGTAACACCGCGGCTTCG
LOC_Os01g63150
Os.42422.1.S1_at--730--8291Chr01:36924728..36924752 (25 bp)
GGCTTCGCAAATGCCTGCCAGTGAA
LOC_Os01g63150
Os.42422.1.S1_at--909--591Chr01:36924718..36924742 (25 bp)
ATGCCTGCCAGTGAACCTCGGAGGT
LOC_Os01g63150
Os.42422.1.S1_at--837--10231Chr01:36924693..36924717 (25 bp)
TTTGGCAAGGCCACCGGTTTCTCAA
LOC_Os01g63150
Os.42422.1.S1_at--688--7871Chr01:36924678..36924702 (25 bp)
GGTTTCTCAACTTCCTTCTTGCTTG
LOC_Os01g63150
Os.42422.1.S1_at--1092--9571Chr01:36924662..36924686 (25 bp)
TCTTGCTTGCATGGTGTTTGCTTTT
LOC_Os01g63150
Target Sequence 
TCGAGGACTTCATCTCGACGTGCGCGTCCGTCCGCTCCGGCGCCGGGGACGCGGACGCGGACGGCGGCGGCAGGAGGAAG
TCGTGCGTGTCGGAGTGCTCGCTGGGCGACGTGGACCTCGAGGCCGGGCTGGCCGAGATCAGCAAGGCCAGCCCGGACAC
GGCCGAGAGGAATTGCCGCATCTGCCACCTCNGCCTCGAGAGCGCCGCCGCCGAGTCCGGCTCCGGCATGTTCCTCGGCT
GCTCCTGCAAGGACGACCTCTCCTGCGCCCATAAGCAGTGCGCCGAGACCTGGTTCAAGATCAGGGGAAACAGGATCTGC
GAAATCTGTGGCTCAACTGCATGCAATGTGGTAGGTATCGGTGATGCCGAGTTCATCGAGCAGTGGAATGAATCAAGTAA
CACCGCGGCTTCGCAAATGCCTGCCAGTGAACCTCGGAGGTTTTGGCAAGGCCACCGGTTTCTCAACTTCCTTCTTGCTT
GCATGGTGTTTGCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis