Browse Element(s) Details


Os.42421.1.S1_at

Description gb:NM_190621.1
DB_XREF= gi:34908325
GEN=P0529H11.16
TID=Os.42421.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42421 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative laccase (P0529H11.16), mRNA.
PROD=putative laccase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6318011/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63150Os.42422.1.S1_at11/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.23640.3.S1_x_at6/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.22659.1.A1_at2/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63150OsAffx.23640.1.S1_x_at1/111+36914640..36927340retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g63160Os.30620.1.S1_at11/111+36933384..36934984Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g63170Os.38395.4.S1_x_at11/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.3.S1_x_at10/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.1.S1_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63170Os.38395.2.S1_x_at8/111+36937626..36941762transposon protein, putative, Mutator sub-class
LOC_Os01g63180Os.42421.1.S1_at11/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63180Os.18847.1.S1_at6/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63190Os.14830.1.S1_a_at11/111+36949678..36954511Multicopper oxidase family protein, expressed
LOC_Os01g63200Os.42420.1.S1_at11/111+36961180..36963829Multicopper oxidase family protein, expressed
LOC_Os01g63210Os.11253.1.S1_at11/111+36966475..36967417SOUL heme-binding family protein, putative, expressed
LOC_Os01g63220Os.35890.1.S1_at11/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63220OsAffx.23899.1.S1_at10/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63230Os.7203.2.S1_x_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63230Os.7203.1.S1_at11/111+36970430..36974856Plant protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42421.1.S1_at--1013--4191Chr01:36946725..36946749 (25 bp)
CCCGGTGGTCTTGGCGAACATGAAC
LOC_Os01g63180
Os.42421.1.S1_at--693--671Chr01:36946744..36946768 (25 bp)
ATGAACAACGTGTCATTCGCTCTCC
LOC_Os01g63180
Os.42421.1.S1_at--990--631Chr01:36946783..36946807 (25 bp)
ATGCTTGAGGCGCTGTACCGGAACA
LOC_Os01g63180
Os.42421.1.S1_at--218--5731Chr01:36946813..36946837 (25 bp)
GACGGCGTGTACACCAGGGACTTCC
LOC_Os01g63180
Os.42421.1.S1_at--741--6691Chr01:36946857..36946881 (25 bp)
GTTCGACTACACTAGCCGCGGGTTG
LOC_Os01g63180
Os.42421.1.S1_at--576--6031Chr01:36946957..36946981 (25 bp)
GAGATGGTGCTCCAGAACACCGCGC
LOC_Os01g63180
Os.42421.1.S1_at--1020--2471Chr01:36946972..36946996 (25 bp)
AACACCGCGCTGGTGGGACTCGAGA
LOC_Os01g63180
Os.42421.1.S1_at--70--5931Chr01:36947075..36947099 (25 bp)
GAGCAGGTGAGTTCAACCTCGTCAA
LOC_Os01g63180
Os.42421.1.S1_at--396--10611Chr01:36947155..36947403 (25 bp)
TTCGTCGCCGATAACCCAGGAATGT
LOC_Os01g63180
Os.42421.1.S1_at--210--5291Chr01:36947818..36947842 (25 bp)
GAATGTGGGCCATGCACTGCCATAT
LOC_Os01g63180
Os.42421.1.S1_at--799--251Chr01:36947839..36947863 (25 bp)
ATATCGATTCTCACTTCGCCATTGG
LOC_Os01g63180
Target Sequence 
CCCGGTGGTCTTGGCGAACATGAACAACGTGTCATTCGCTCTCCCGAACACCGTCTCCATGCTTGAGGCGCTGTACCGGA
ACACGGCGGACGGCGTGTACACCAGGGACTTCCCCGACCAGCCGCCCGTCGCGTTCGACTACACTAGCCGCGGGTTGCTC
GGTAACTCGCCTCTGGCATCCACGGGGAGCCCGTCGACGAAGGTGAAGACGCTCAGGTACAACGCGACGGTGGAGATGGT
GCTCCAGAACACCGCGCTGGTGGGACTCGAGAGCCACCCGATGCACCTGCACGGGTTCAACTTCTTCGTGGTGGCGCAGG
GGTTCGGCAACAACGACGGCGAAGCGGCTGGAGCAGGTGAGTTCAACCTCGTCAACCCGCAGGAGCGGAACACCGTCGCC
GTGCCGACCGGTGGGTGGGCAGTCATCCGCTTCGTCGCCGATAACCCAGGAATGTGGGCCATGCACTGCCATATCGATTC
TCACTTCGCCATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis