Browse Element(s) Details


Os.42431.1.S1_at

Description gb:AK120668.1
DB_XREF= gi:37990291
TID=Os.42431.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.42431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0005H10.18 (P0005H10.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160C21, full insert sequence.
FL= gb:AK120668.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6291011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62870Os.5560.1.S1_at11/111+36737563..36741458oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62880Os.7392.2.S1_x_at11/111+36744963..36746878oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62890Os.49468.2.S1_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890OsAffx.21738.1.S1_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890Os.49468.2.S1_x_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890OsAffx.21738.1.S1_x_at10/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62900Os.33244.1.S2_at11/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62900Os.33244.1.S1_at11/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62900Os.10728.1.S1_at1/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62910Os.42431.1.S1_at11/111+36765797..36769793pentatricopeptide, putative, expressed
LOC_Os01g62920Os.19639.1.S1_at11/111+36772211..36776800homeodomain protein JUBEL2, putative, expressed
LOC_Os01g62920Os.42388.1.S1_x_at1/111+36772211..36776800homeodomain protein JUBEL2, putative, expressed
LOC_Os01g62950Os.34462.1.S1_at11/111+36794768..36797290Ras-related protein Rab11C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031425biological_processchloroplast RNA processing
GO:0031426biological_processpolycistronic mRNA processing
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42431.1.S1_at--673--4991Chr01:36766276..36766300 (25 bp)
GCATGATAACCCTACCATCGAGTTG
LOC_Os01g62910
Os.42431.1.S1_at--757--1731Chr01:36766263..36766287 (25 bp)
ACCATCGAGTTGTTAGGAGTCCATC
LOC_Os01g62910
Os.42431.1.S1_at--309--10431Chr01:36766251..36766275 (25 bp)
TTAGGAGTCCATCAACGCCAACAGG
LOC_Os01g62910
Os.42431.1.S1_at--149--751Chr01:36766217..36766241 (25 bp)
ATGTATGCGCCCTGTGCTTATGCCA
LOC_Os01g62910
Os.42431.1.S1_at--288--7331Chr01:36766204..36766228 (25 bp)
GTGCTTATGCCAACCTATATTTGAT
LOC_Os01g62910
Os.42431.1.S1_at--693--7631Chr01:36766163..36766187 (25 bp)
GGGACTGAATGAAACGCTGACCATT
LOC_Os01g62910
Os.42431.1.S1_at--639--2311Chr01:36766051..36766075 (25 bp)
AAAGGACATACCTCAGCACCTAGAC
LOC_Os01g62910
Os.42431.1.S1_at--566--3411Chr01:36766009..36766033 (25 bp)
CAGAACCGTGTGCTTGCATTATGGA
LOC_Os01g62910
Os.42431.1.S1_at--612--8511Chr01:36765988..36766012 (25 bp)
TGGAATACCGCAGCACTGTTGCAAT
LOC_Os01g62910
Os.42431.1.S1_at--357--6771Chr01:36765889..36765913 (25 bp)
GTTAAACACCTATCAACTTGCTGTA
LOC_Os01g62910
Os.42431.1.S1_at--340--9111Chr01:36765854..36765878 (25 bp)
TGCTGCCTTTCCATCAGTAGTGATA
LOC_Os01g62910
Target Sequence 
GCATGATAACCCTACCATCGAGTTGTTAGGAGTCCATCAACGCCAACAGGCCCCCGAGCATGTATGCGCCCTGTGCTTAT
GCCAACCTATATTTGATAAAGGAAAGAAAATAGGGGACTGAATGAAACGCTGACCATTCAATAGTAACAACATATATTTT
CGATAACTATTTTTTTTTGATAACTAGTTAACGAAAATGTCCAAGTTATAAAGTGATACAAATTTAAAGGACATACCTCA
GCACCTAGACCAAAGCGAGCCCCATCACAGAACCGTGTGCTTGCATTATGGAATACCGCAGCACTGTTGCAATTTATAGA
AGAATAACTCCATTAATTAAGGTATGTACTAAAAGCGGCAAACATAATAGTTGTGCAAAGGAAATTAGTTAAACACCTAT
CAACTTGCTGTAGAAAAGTCTCTGCTGCCTTTCCATCAGTAGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis