Browse Element(s) Details


Os.42764.1.S1_at

Description gb:AK121863.1
DB_XREF= gi:37991486
TID=Os.42764.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.42764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cysteine proteinase inhibitor Scb-like protein (P0004D12.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033103C19, full insert sequence.
FL= gb:AK121863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6866010/11Cystatin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68620Os.35017.1.S1_at11/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_x_at9/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_at1/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68630Os.19016.1.S1_at11/111+40184653..40188131expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_x_at11/111+40189019..40189885expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_at11/111+40189019..40189885expressed protein
LOC_Os01g68650Os.27232.1.S1_at11/111+40193187..40194309uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g68660Os.42764.1.S1_at10/111+40203307..40204092Cystatin domain containing protein, expressed
LOC_Os01g68670NANA1+40205808..40206254cystatin, putative, expressed
LOC_Os01g68680OsAffx.2439.1.S1_at11/111+40207864..40217477TPR Domain containing protein, expressed
LOC_Os01g68680Os.45968.1.S1_at10/111+40207864..40217477TPR Domain containing protein, expressed
LOC_Os01g68690OsAffx.23974.1.S1_at10/111+40219839..40221305hypothetical protein
LOC_Os01g68700Os.5763.1.S1_at11/111+40221495..40224582Helix-loop-helix DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004869molecular_functioncysteine protease inhibitor activity
GO:0030234molecular_functionenzyme regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42764.1.S1_at--390--5451Chr01:40203857..40203881 (25 bp)
GAACGAGTCGTAGCACGCAGGCAGA
LOC_Os01g68660
Os.42764.1.S1_at--523--1351Chr01:40203879..40203903 (25 bp)
AGAGAGAGGCAAGGTCACACAGGAC
LOC_Os01g68660
Os.42764.1.S1_at--916--7811Chr01:40203891..40203915 (25 bp)
GGTCACACAGGACACAGCTGAGCTG
LOC_Os01g68660
Os.42764.1.S1_at--717--3391Chr01:40203905..40203929 (25 bp)
CAGCTGAGCTGGTGTAAGAATAAAA
LOC_Os01g68660
Os.42764.1.S1_at--831--9971Chr01:40203934..40203958 (25 bp)
TACCAAGTTTCAGGTGCAGTTGTGC
LOC_Os01g68660
Os.42764.1.S1_at--796--7691Chr01:40203967..40203991 (25 bp)
GGGTACTCGTATTCAGTAGAGAGTG
LOC_Os01g68660
Os.42764.1.S1_at--983--5491Chr01:40203991..40204015 (25 bp)
GAACAAAGTAAGTGTACGTGTGCGT
LOC_Os01g68660
Os.42764.1.S1_at--719--8751Chr01:40204003..40204027 (25 bp)
TGTACGTGTGCGTGTTGCGGCAATA
LOC_Os01g68660
Os.42764.1.S1_at--695--9131Chr01:40204018..40204042 (25 bp)
TGCGGCAATAGATGTTCGAAGGCTT
LOC_Os01g68660
Os.42764.1.S1_at--523--9351Chr01:40204033..40204057 (25 bp)
TCGAAGGCTTTTTGTGTAGAGAGAC
LOC_Os01g68660
Os.42764.1.S1_at--1115--5991NONE
GAGAGTGGCAATGAAGTACTATACT
NONE
Target Sequence 
GAACGAGTCGTAGCACGCAGGCAGAGAGAGGCAAGGTCACACAGGACACAGCTGAGCTGGTGTAAGAATAAAAAATGTAC
CAAGTTTCAGGTGCAGTTGTGCACCGAACGGGGTACTCGTATTCAGTAGAGAGTGAACAAAGTAAGTGTACGTGTGCGTG
TTGCGGCAATAGATGTTCGAAGGCTTTTTGTGTAGAGAGACGGGAGAGAGTGGCAATGAAGTACTATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis