Browse Element(s) Details


Os.35017.2.S1_x_at

Description gb:NM_189925.1
DB_XREF= gi:34906933
GEN=P0004D12.8
TID=Os.35017.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35017 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) vacuolar sorting receptor-like protein (P0004D12.8), mRNA.
PROD=vacuolar sorting receptor-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g686209/11signal peptide peptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68560Os.28968.1.S1_at11/111+40153644..40155581expressed protein
LOC_Os01g68560OsAffx.993.1.S1_at1/111+40153644..40155581expressed protein
LOC_Os01g68570Os.33210.2.S1_x_at11/111+40156558..40158304expressed protein
LOC_Os01g68570Os.33210.1.S1_at10/111+40156558..40158304expressed protein
LOC_Os01g68580Os.27932.1.S1_at9/111+40163505..40164101Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68589Os.7317.2.S1_at11/111+40166470..40167291Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68598Os.51597.1.S1_at11/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.7296.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.23972.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68610Os.32106.1.S1_at11/111+40176494..40178262pentatricopeptide, putative, expressed
LOC_Os01g68620Os.35017.1.S1_at11/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_x_at9/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_at1/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68630Os.19016.1.S1_at11/111+40184653..40188131expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_x_at11/111+40189019..40189885expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_at11/111+40189019..40189885expressed protein
LOC_Os01g68650Os.27232.1.S1_at11/111+40193187..40194309uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g68660Os.42764.1.S1_at10/111+40203307..40204092Cystatin domain containing protein, expressed
LOC_Os01g68670NANA1+40205808..40206254cystatin, putative, expressed
LOC_Os01g68680OsAffx.2439.1.S1_at11/111+40207864..40217477TPR Domain containing protein, expressed
LOC_Os01g68680Os.45968.1.S1_at10/111+40207864..40217477TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35017.2.S1_x_at--1144--51Chr01:40181609..40181633 (25 bp)
ATTGCAAGTGGTCCATCTGCCAAAT
LOC_Os01g68620
Os.35017.2.S1_x_at--725--2311Chr01:40181733..40181754 (22 bp)
AAAGTTGCAACAGCGCTTCTTGTGA
LOC_Os01g68620
Os.35017.2.S1_x_at--1115--6431Chr01:40181819..40181923 (25 bp)
GATCACAGTTGCTCGTGGTAGCGAT
LOC_Os01g68620
Os.35017.2.S1_x_at--1023--3711Chr01:40181931..40181955 (25 bp)
CTAGCCTTCCCATGGTTCTGAAGAT
LOC_Os01g68620
Os.35017.2.S1_x_at--219--10651Chr01:40182014..40182038 (25 bp)
TTCCCAGGACTACTTGTTGCTTTCA
LOC_Os01g68620
Os.35017.2.S1_x_at--263--2311Chr01:40182214..40182238 (25 bp)
AAAGGACTTGACTGACGGCTATTTC
LOC_Os01g68620
Os.35017.2.S1_x_at--156--211Chr01:40182234..40182258 (25 bp)
ATTTCCTCTGCCTAATGATCGGTTA
LOC_Os01g68620
Os.35017.2.S1_x_at--927--10451Chr01:40182256..40182362 (25 bp)
TTACGCCTTCGGTTTGTCATGCACA
LOC_Os01g68620
Os.35017.2.S1_x_at--936--651Chr01:40182356..40182380 (25 bp)
ATGCACATATGTTGGCCTGTACCTA
LOC_Os01g68620
Os.35017.2.S1_x_at--1154--2811Chr01:40182898..40182922 (25 bp)
AAGTATCTGTACTCCGGTGTTCCTT
NONE
Os.35017.2.S1_x_at--575--6691Chr01:40182916..40182940 (25 bp)
GTTCCTTTCTTCTCGACTGTAATTT
NONE
Target Sequence 
ATTGCAAGTGGTCCATCTGCCAAATATCAAAGTTGCAACAGCGCTTCTTGTGAGCGCTTTCATGTATGACATTTTTTGGG
TGTTCATATCACCTTTCATATTCAAGAAAAGTGTCATGATCACAGTTGCTCGTGGTAGCGATGAGGGACCTAGCCTTCCC
ATGGTTCTGAAGATGCCAAAGGAGTTTGATACATGGAATGGCTATGACATGATCGGATTTGGGGACATTCTTTTCCCAGG
ACTACTTGTTGCTTTCAGTTTCAGGTATGACAGAGCAAATGGAAAGGACTTGACTGACGGCTATTTCCTCTGCCTAATGA
TCGGTTACGCCTTCGGTTTGTCATGCACATATGTTGGCCTGTACCTAATGAAGAGTGGACAGCCAGCTCTCCTCTACCTA
GTCCCATCAACACTAGGAACTATTGTCACGCTAGGTGCGAAAAGAGGAGAGCTAAGTCAGCTCTGGAATGCTAAAAAACT
TCAGATGTTGCTCAAGTATCTGTACTCCGGTGTTCCTTTCTTCTCGACTGTAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35017.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis