Browse Element(s) Details


Os.27232.1.S1_at

Description gb:AK107951.1
DB_XREF= gi:32993160
TID=Os.27232.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27232 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to Arabidopsis thaliana chromosome 3, At3g07350 (P0004D12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-B11, full insert sequence.
FL= gb:AK107951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6865011/11uncharacterized plant-specific domain TIGR01615 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68598Os.51597.1.S1_at11/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.7296.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.23972.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68610Os.32106.1.S1_at11/111+40176494..40178262pentatricopeptide, putative, expressed
LOC_Os01g68620Os.35017.1.S1_at11/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_x_at9/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_at1/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68630Os.19016.1.S1_at11/111+40184653..40188131expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_x_at11/111+40189019..40189885expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_at11/111+40189019..40189885expressed protein
LOC_Os01g68650Os.27232.1.S1_at11/111+40193187..40194309uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g68660Os.42764.1.S1_at10/111+40203307..40204092Cystatin domain containing protein, expressed
LOC_Os01g68670NANA1+40205808..40206254cystatin, putative, expressed
LOC_Os01g68680OsAffx.2439.1.S1_at11/111+40207864..40217477TPR Domain containing protein, expressed
LOC_Os01g68680Os.45968.1.S1_at10/111+40207864..40217477TPR Domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27232.1.S1_at--534--3471Chr01:40193731..40193755 (25 bp)
CAGGTACATTGTGGACGCGGACTTC
LOC_Os01g68650
Os.27232.1.S1_at--689--2751Chr01:40193532..40193556 (25 bp)
AAGACCCGGTACATGCTCGCCAAGT
LOC_Os01g68650
Os.27232.1.S1_at--637--8491Chr01:40193508..40193532 (25 bp)
TGGCTCGGCCCCTACAAGAGGTCGA
LOC_Os01g68650
Os.27232.1.S1_at--452--6171Chr01:40193368..40193392 (25 bp)
GAGGATCAAGTAGACTCGGCGATGA
LOC_Os01g68650
Os.27232.1.S1_at--90--1191Chr01:40193360..40193384 (25 bp)
AGTAGACTCGGCGATGAAACATCAT
LOC_Os01g68650
Os.27232.1.S1_at--813--6311Chr01:40193348..40193372 (25 bp)
GATGAAACATCATAATCAAGGCATT
LOC_Os01g68650
Os.27232.1.S1_at--771--351Chr01:40193334..40193358 (25 bp)
ATCAAGGCATTAATTAACGGTGTTT
LOC_Os01g68650
Os.27232.1.S1_at--656--3131Chr01:40193294..40193318 (25 bp)
AATTAGAGCGAGAGTTCCTTTCAAC
LOC_Os01g68650
Os.27232.1.S1_at--814--4611Chr01:40193287..40193311 (25 bp)
GCGAGAGTTCCTTTCAACTTTGAGT
LOC_Os01g68650
Os.27232.1.S1_at--1002--6691Chr01:40193281..40193305 (25 bp)
GTTCCTTTCAACTTTGAGTTGCTCT
LOC_Os01g68650
Os.27232.1.S1_at--765--8891Chr01:40193267..40193291 (25 bp)
TGAGTTGCTCTCGAATTTGTTTTGT
LOC_Os01g68650
Target Sequence 
CAGGTACATTGTGGACGCGGACTTCCGGGCGGGGCTGGAGGTCGCGCGCGCGACGGCGGAGTACGCCGTCGTCGTGGCCG
CCGTGCCGGCGTCGGTGGTGGTGGCGCGGGAGGAGGCCGTCGGGCGCGCCGTGCGCGTCGCGGCCGACGCGGCGCGGCGG
TCGCTCCGTTCGCACGGCCTGCACGTCCCGCCGTGGCGCAAGACCCGGTACATGCTCGCCAAGTGGCTCGGCCCCTACAA
GAGGTCGACGGCCACCTCGCCGTCGGCCGCCGGAGCAATGCCGATGCCCGCCGCCGCCGCCGGGATGGACGTCAAGTGCC
GCGCCGTCGGGTTCTTCACGCCGCCGCCGGCCGCTCCGGCGGCGAGGATCAAGTAGACTCGGCGATGAAACATCATAATC
AAGGCATTAATTAACGGTGTTTGTAGANGTAGAGATTAATTAGAGCGAGAGTTCCTTTCAACTTTGAGTTGCTCTCGAAT
TTGTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis