Browse Element(s) Details


Os.51597.1.S1_at

Description gb:AK063138.1
DB_XREF= gi:32973156
TID=Os.51597.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-G05, full insert sequence.
FL= gb:AK063138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6859811/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68540Os.8115.1.S1_at11/111+40148884..40150612Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os01g68550Os.35889.1.S1_at7/111+40151802..40153286pentatricopeptide, putative, expressed
LOC_Os01g68560Os.28968.1.S1_at11/111+40153644..40155581expressed protein
LOC_Os01g68560OsAffx.993.1.S1_at1/111+40153644..40155581expressed protein
LOC_Os01g68570Os.33210.2.S1_x_at11/111+40156558..40158304expressed protein
LOC_Os01g68570Os.33210.1.S1_at10/111+40156558..40158304expressed protein
LOC_Os01g68580Os.27932.1.S1_at9/111+40163505..40164101Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68589Os.7317.2.S1_at11/111+40166470..40167291Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68598Os.51597.1.S1_at11/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.7296.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.23972.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68610Os.32106.1.S1_at11/111+40176494..40178262pentatricopeptide, putative, expressed
LOC_Os01g68620Os.35017.1.S1_at11/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_x_at9/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_at1/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68630Os.19016.1.S1_at11/111+40184653..40188131expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_x_at11/111+40189019..40189885expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_at11/111+40189019..40189885expressed protein
LOC_Os01g68650Os.27232.1.S1_at11/111+40193187..40194309uncharacterized plant-specific domain TIGR01615 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51597.1.S1_at--68--8271Chr01:40172408..40172556 (25 bp)
GGCAGCATCTCAGGTACAGACTATG
LOC_Os01g68598
Os.51597.1.S1_at--1041--5671Chr01:40172550..40172574 (25 bp)
GACTATGGAGAACAATATCCTCACC
LOC_Os01g68598
Os.51597.1.S1_at--97--3111Chr01:40172563..40172587 (25 bp)
AATATCCTCACCAAACATTACCTGA
LOC_Os01g68598
Os.51597.1.S1_at--152--4411Chr01:40173205..40173229 (25 bp)
GCCACAGGTGATCATTAATAATTAA
LOC_Os01g68598
Os.51597.1.S1_at--172--8071Chr01:40173232..40173256 (25 bp)
GGAGCTTCTGTTATGAGTAGTAGTT
LOC_Os01g68598
Os.51597.1.S1_at--1006--6071Chr01:40173246..40173270 (25 bp)
GAGTAGTAGTTTGCATCCATTTTAT
LOC_Os01g68598
Os.51597.1.S1_at--672--9531Chr01:40173286..40173310 (25 bp)
TCTACCCTTCTAGGCTCAAAAGGTT
LOC_Os01g68598
Os.51597.1.S1_at--492--10771Chr01:40173325..40173349 (25 bp)
TTGTTTTAACAAGTGGCCAGCTAGT
LOC_Os01g68598
Os.51597.1.S1_at--1148--3211Chr01:40173334..40173358 (25 bp)
CAAGTGGCCAGCTAGTAGAGGATTA
LOC_Os01g68598
Os.51597.1.S1_at--29--2731Chr01:40173377..40173401 (25 bp)
AAGATGTTCAGGTTGTGGACTGGTA
LOC_Os01g68598
Os.51597.1.S1_at--805--4891Chr01:40173437..40173461 (25 bp)
GCTTATTTATACTATTGTGCAGACA
LOC_Os01g68598
Target Sequence 
GGCAGCATCTCAGGTACAGACTATGGAGAACAATATCCTCACCAAACATTACCTGAAGAACATATACATTTGCAGGAGAA
CATCAAGGTTCTAAACAAGGAGAGGCTGCCCAAATATGCAAGGAGAATGTTGATTGGTTCGACTGCTCCAATATGCACAT
ACAACGAGTGCAGAGGGTGTCGATTCAAGTGTACTGCCGAGCAGGTCCCAGTGGATGCAAATGACCCCATGAATAGTGCT
TACCACTACAAATGTGTTTGCCACAGGTGATCATTAATAATTAAGAGGAGCTTCTGTTATGAGTAGTAGTTTGCATCCAT
TTTATTCTCTTTTTCCCCCTTCTACCCTTCTAGGCTCAAAAGGTTCATTTTTTCCCCTTTTGTTTTAACAAGTGGCCAGC
TAGTAGAGGATTAGAGGGCATTTTGTATTTTAAGATGTTCAGGTTGTGGACTGGTAATTTTGGAAGTAAATGTTAAAAAA
TTTGAAAAACAGCTTATTTATACTATTGTGCAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis