Browse Element(s) Details


Os.33210.2.S1_x_at

Description gb:NM_189919.1
DB_XREF= gi:34906921
GEN=P0470A12.41
TID=Os.33210.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.41 (P0470A12.41), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0470A12.41 (P0470A12.41), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6857011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68510Os.33401.2.S1_x_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68510Os.33401.1.S1_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68524Os.7733.1.S2_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_s_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.7733.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.51807.1.S1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.47816.1.A1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68540Os.8115.1.S1_at11/111+40148884..40150612Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os01g68550Os.35889.1.S1_at7/111+40151802..40153286pentatricopeptide, putative, expressed
LOC_Os01g68560Os.28968.1.S1_at11/111+40153644..40155581expressed protein
LOC_Os01g68560OsAffx.993.1.S1_at1/111+40153644..40155581expressed protein
LOC_Os01g68570Os.33210.2.S1_x_at11/111+40156558..40158304expressed protein
LOC_Os01g68570Os.33210.1.S1_at10/111+40156558..40158304expressed protein
LOC_Os01g68580Os.27932.1.S1_at9/111+40163505..40164101Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68589Os.7317.2.S1_at11/111+40166470..40167291Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68598Os.51597.1.S1_at11/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.7296.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.23972.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68610Os.32106.1.S1_at11/111+40176494..40178262pentatricopeptide, putative, expressed
LOC_Os01g68620Os.35017.1.S1_at11/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_x_at9/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_at1/111+40179469..40182897signal peptide peptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33210.2.S1_x_at--807--4791Chr01:40157631..40157655 (25 bp)
GCTCGATGACTGCAAGTGGCGCCAA
LOC_Os01g68570
Os.33210.2.S1_x_at--167--4271Chr01:40157603..40157627 (25 bp)
CCGGCGTTCGGCGACTGGAATATAT
LOC_Os01g68570
Os.33210.2.S1_x_at--1011--251Chr01:40157582..40157606 (25 bp)
ATATGGGATGATATGCCCGTCACCC
LOC_Os01g68570
Os.33210.2.S1_x_at--810--7091Chr01:40157564..40157588 (25 bp)
GTCACCCAATACTTCGAGTCAGGGA
LOC_Os01g68570
Os.33210.2.S1_x_at--321--6091Chr01:40157549..40157573 (25 bp)
GAGTCAGGGACTTTCTTCTTCACAG
LOC_Os01g68570
Os.33210.2.S1_x_at--891--3671Chr01:40157539..40157563 (25 bp)
CTTTCTTCTTCACAGCACAAGCAGA
LOC_Os01g68570
Os.33210.2.S1_x_at--164--971Chr01:40157506..40157530 (25 bp)
AGGACCTCTTCAAGGTGCCCCAGTT
LOC_Os01g68570
Os.33210.2.S1_x_at--1143--4371Chr01:40157478..40157501 (24 bp)
GCCAACCCCTACAACTACAAGAAGT
LOC_Os01g68570
Os.33210.2.S1_x_at--831--3011Chr01:40157271..40157295 (25 bp)
AATGCGAATGCTGTGCGTGTGAGAA
LOC_Os01g68570
Os.33210.2.S1_x_at--396--971Chr01:40157180..40157204 (25 bp)
AGGACCTGTACAAGATCTCACCAAA
LOC_Os01g68570
Os.33210.2.S1_x_at--987--6411Chr01:40157167..40157191 (25 bp)
GATCTCACCAAAGCTAATCTGCAGG
LOC_Os01g68570
Target Sequence 
GCTCGATGACTGCAAGTGGCGCCAAATCCCGGCGTTCGGCGACTGGAATATATGGGATGATATGCCCGTCACCCAATACT
TCGAGTCAGGGACTTTCTTCTTCACAGCACAAGCAGAGAAAGATGAGGACCTCTTCAAGGTGCCCCAGTTCCCTGCCAAC
CCCTACAACTACAAGAAGTGCGTTGTTCGAGTGAAAGGGGAGAAAGAAAACGCGAATGCGAATGCGAATGCTGTGCGTGT
GAGAAAGGGAGGAAGGAAGCAGCAGTATCTGAATGAGCAGCAGAAGTGGAAGCCAAAGACGGCAGTGGATGAGGACCTGT
ACAAGATCTCACCAAAGCTAATCTGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33210.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis