Browse Element(s) Details


OsAffx.993.1.S1_at

Description gb:NM_190997.1
DB_XREF= gi:34909077
GEN=P0702B09.22
TID=OsAffx.993.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0702B09.22 (P0702B09.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g685601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68500Os.11035.1.S1_at11/111+40128313..40129336expressed protein
LOC_Os01g68510Os.33401.2.S1_x_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68510Os.33401.1.S1_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68524Os.7733.1.S2_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_s_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.7733.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.51807.1.S1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.47816.1.A1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68540Os.8115.1.S1_at11/111+40148884..40150612Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os01g68550Os.35889.1.S1_at7/111+40151802..40153286pentatricopeptide, putative, expressed
LOC_Os01g68560Os.28968.1.S1_at11/111+40153644..40155581expressed protein
LOC_Os01g68560OsAffx.993.1.S1_at1/111+40153644..40155581expressed protein
LOC_Os01g68570Os.33210.2.S1_x_at11/111+40156558..40158304expressed protein
LOC_Os01g68570Os.33210.1.S1_at10/111+40156558..40158304expressed protein
LOC_Os01g68580Os.27932.1.S1_at9/111+40163505..40164101Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68589Os.7317.2.S1_at11/111+40166470..40167291Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68598Os.51597.1.S1_at11/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.7296.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.23972.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68610Os.32106.1.S1_at11/111+40176494..40178262pentatricopeptide, putative, expressed
LOC_Os01g68620Os.35017.1.S1_at11/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_x_at9/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_at1/111+40179469..40182897signal peptide peptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.993.1.S1_at--778--2051NONE
ACTTCTTGCATGCAGTCGCAACCCT
NONE
OsAffx.993.1.S1_at--284--4332Chr02:17996444..17996468 (25 bp)
GCCGGTTTTGCCCTTCCGTCAGTGG
NONE
OsAffx.993.1.S1_at--1099--7951Chr01:34564862..34564886 (25 bp)
GGATCCGCGTTCACCACATGCATTG
NONE
OsAffx.993.1.S1_at--635--9671Chr01:34564872..34564896 (25 bp)
TCACCACATGCATTGGGCGCGCCAT
NONE
OsAffx.993.1.S1_at--1053--3671Chr01:34564930..34564954 (25 bp)
CTTTGGCCACATCCGGTCTCGTCTT
NONE
OsAffx.993.1.S1_at--479--551Chr01:34564940..34564964 (25 bp)
ATCCGGTCTCGTCTTCCGATCACGT
NONE
OsAffx.993.1.S1_at--10--7191Chr01:34564978..34565002 (25 bp)
GTCTGATCGCAAGCGAGGTCGTCGC
NONE
OsAffx.993.1.S1_at--7--5171Chr01:34564986..34565010 (25 bp)
GCAAGCGAGGTCGTCGCCTACGCGA
NONE
OsAffx.993.1.S1_at--258--9951Chr01:34565004..34565028 (25 bp)
TACGCGACGTCCTTGTTGTCGCCAT
NONE
OsAffx.993.1.S1_at--1162--9594Chr03:14439094..14439118 (25 bp)
TCATCGCCACGATTGACGATCTCCT
NONE
OsAffx.993.1.S1_at--83--8951Chr01:34565047..34565071 (25 bp)
TGACGATCTCCTGTCAATGCGCGAT
NONE
Target Sequence 
ACTTCTTGCATGCAGTCGCAACCCTCGTGTTCACCGTCCACGACCCCGTCGTCATGGCCCTGCACGTCCGCCGCGCCGCG
CTACGCTCGCCGGTTTTGCCCTTCCGTCAGTGGCCTCCCTGCCGCCGCGGATCCGCGTTCACCACATGCATTGGGCGCGC
CATCCATGGCGCTACCCCTCCGATCTCTCCGGTCGCCTTTGGCCACATCCGGTCTCGTCTTCCGATCACGTTCCGCCATC
GCCGGTCTGATCGCAAGCGAGGTCGTCGCCTACGCGACGTCCTTGTTGTCGCCATCGATCTCATCGCCACGATTGACGAT
CTCCTGTCAATGCGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis