Browse Element(s) Details


Os.28968.1.S1_at

Description gb:AK110828.1
DB_XREF= gi:32996037
TID=Os.28968.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.40 (P0470A12.40), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-H11, full insert sequence.
FL= gb:AK110828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6856011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68500Os.11035.1.S1_at11/111+40128313..40129336expressed protein
LOC_Os01g68510Os.33401.2.S1_x_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68510Os.33401.1.S1_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68524Os.7733.1.S2_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_s_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.7733.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.51807.1.S1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.47816.1.A1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68540Os.8115.1.S1_at11/111+40148884..40150612Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os01g68550Os.35889.1.S1_at7/111+40151802..40153286pentatricopeptide, putative, expressed
LOC_Os01g68560Os.28968.1.S1_at11/111+40153644..40155581expressed protein
LOC_Os01g68560OsAffx.993.1.S1_at1/111+40153644..40155581expressed protein
LOC_Os01g68570Os.33210.2.S1_x_at11/111+40156558..40158304expressed protein
LOC_Os01g68570Os.33210.1.S1_at10/111+40156558..40158304expressed protein
LOC_Os01g68580Os.27932.1.S1_at9/111+40163505..40164101Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68589Os.7317.2.S1_at11/111+40166470..40167291Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68598Os.51597.1.S1_at11/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.7296.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.23972.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68610Os.32106.1.S1_at11/111+40176494..40178262pentatricopeptide, putative, expressed
LOC_Os01g68620Os.35017.1.S1_at11/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_x_at9/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_at1/111+40179469..40182897signal peptide peptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28968.1.S1_at--604--4951Chr01:40154184..40154208 (25 bp)
GCATTATCTCAGTGATCTGGCCGAT
LOC_Os01g68560
Os.28968.1.S1_at--404--7971Chr01:40154147..40154171 (25 bp)
GGATGCAACTTCGACGTGCTATTGG
LOC_Os01g68560
Os.28968.1.S1_at--549--9771Chr01:40154106..40154130 (25 bp)
TAAGGTCTAGAGTAGCCGTCGCAAT
LOC_Os01g68560
Os.28968.1.S1_at--717--2611Chr01:40154074..40154098 (25 bp)
AACCCGGCAATTTTGGACGCTGGAT
LOC_Os01g68560
Os.28968.1.S1_at--722--871Chr01:40154051..40154075 (25 bp)
ATGGCCGCCGGATTCAACTGATGTT
LOC_Os01g68560
Os.28968.1.S1_at--126--6713Chr12:19727898..19727923 (24 bp)
GTTCCCGAGCAATTTTCCTGGCCAA
NONE
Os.28968.1.S1_at--1018--2371Chr01:40153919..40153943 (25 bp)
AAACCCGGCAGTTCAGCTCGGAGAA
LOC_Os01g68560
Os.28968.1.S1_at--120--10011Chr01:40153838..40153862 (25 bp)
TAGCTCTGCTTCGATGACCCGATAA
LOC_Os01g68560
Os.28968.1.S1_at--263--2551Chr01:40153747..40153771 (25 bp)
AACTCTGCTTGGTTGATCCATCAGA
LOC_Os01g68560
Os.28968.1.S1_at--568--9991Chr01:40153718..40153742 (25 bp)
TAGCCACCTGGCAATTTTGTACCTC
LOC_Os01g68560
Os.28968.1.S1_at--276--10811Chr01:40153702..40153726 (25 bp)
TTGTACCTCTGCCTTGATGTAATCC
LOC_Os01g68560
Target Sequence 
GCATTATCTCAGTGATCTGGCCGATGGCTTCGACTTTGGATGCAACTTCGACGTGCTATTGGACTGAGTGATCTGCAGTA
AGGTCTAGAGTAGCCGTCGCAATACGGTGAAACCCGGCAATTTTGGACGCTGGATGGCCGCCGGATTCAACTGATGTTGC
CACCGCCGCCGCCAAGTTCCCGAGCAATTTTCCTGGCCAACAGGCGAGGGACATGGGGCTATCTATCTATAGGTTTGATG
CAAGGAAAAGACCTTGTTGTTTTGGAAACCCGGCAGTTCAGCTCGGAGAAGACCTAGCAGTTCTGTCAGACCGGCAGCTC
TGCTTGGAGAAGATCCAGCAATTTTGTAGCTCTGCTTCGATGACCCGATAATATTGTAGGTTAGATTGGATTGATCCAGC
AGTTTTAGTAGTCTGGAGAAGATCCGGCAATTTTGTAAACTCTGCTTGGTTGATCCATCAGATATGTAGCCACCTGGCAA
TTTTGTACCTCTGCCTTGATGTAATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis