Browse Element(s) Details


Os.11035.1.S1_at

Description gb:AK070387.1
DB_XREF= gi:32980411
TID=Os.11035.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11035 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.30 (P0470A12.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023051C24, full insert sequence.
FL= gb:AK070387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6850011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68440Os.36529.1.S1_at11/111+40099940..40103634expressed protein
LOC_Os01g68450Os.23056.2.S1_x_at11/111+40104637..40106746expressed protein
LOC_Os01g68450Os.23056.1.S1_at11/111+40104637..40106746expressed protein
LOC_Os01g68460OsAffx.11788.1.S1_at11/111+40107632..40110194DC1 domain-containing protein, putative, expressed
LOC_Os01g68470OsAffx.11789.1.S1_s_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.2.S1_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.1.S1_at5/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.16999.1.S1_at1/111+40116502..40118073hypothetical protein
LOC_Os01g68490Os.9880.3.S1_at11/111+40121088..40126190pentatricopeptide, putative, expressed
LOC_Os01g68480Os.9880.1.S1_a_at11/111+40121360..40122658Thioredoxin F-type 2, chloroplast precursor, putative, expressed
LOC_Os01g68500Os.11035.1.S1_at11/111+40128313..40129336expressed protein
LOC_Os01g68510Os.33401.2.S1_x_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68510Os.33401.1.S1_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68524Os.7733.1.S2_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_s_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.7733.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.51807.1.S1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.47816.1.A1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68540Os.8115.1.S1_at11/111+40148884..40150612Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os01g68550Os.35889.1.S1_at7/111+40151802..40153286pentatricopeptide, putative, expressed
LOC_Os01g68560Os.28968.1.S1_at11/111+40153644..40155581expressed protein
LOC_Os01g68560OsAffx.993.1.S1_at1/111+40153644..40155581expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11035.1.S1_at--71--6791Chr01:40128454..40128478 (25 bp)
GTTAGTAACCTTTCATTCCTCATCA
LOC_Os01g68500
Os.11035.1.S1_at--139--9811Chr01:40128449..40128473 (25 bp)
TAACCTTTCATTCCTCATCACTCTG
LOC_Os01g68500
Os.11035.1.S1_at--326--9611Chr01:40128435..40128459 (25 bp)
TCATCACTCTGTTCTTCTTGCCGTT
LOC_Os01g68500
Os.11035.1.S1_at--1049--3311Chr01:40128431..40128455 (25 bp)
CACTCTGTTCTTCTTGCCGTTCTTG
LOC_Os01g68500
Os.11035.1.S1_at--1142--4231Chr01:40128415..40128439 (25 bp)
CCGTTCTTGTTGTCCAGTGCGATCA
LOC_Os01g68500
Os.11035.1.S1_at--16--6751Chr01:40128413..40128437 (25 bp)
GTTCTTGTTGTCCAGTGCGATCAAA
LOC_Os01g68500
Os.11035.1.S1_at--673--6631Chr01:40128407..40128431 (25 bp)
GTTGTCCAGTGCGATCAAAGCCGGC
LOC_Os01g68500
Os.11035.1.S1_at--956--7251Chr01:40128404..40128428 (25 bp)
GTCCAGTGCGATCAAAGCCGGCCGA
LOC_Os01g68500
Os.11035.1.S1_at--171--4531Chr01:40128344..40128368 (25 bp)
GCCGCCACGGCGATAATTTTTCGTG
LOC_Os01g68500
Os.11035.1.S1_at--1058--1931Chr01:40128338..40128362 (25 bp)
ACGGCGATAATTTTTCGTGGTTATG
LOC_Os01g68500
Os.11035.1.S1_at--882--171Chr01:40128329..40128353 (25 bp)
ATTTTTCGTGGTTATGATGGTTCGG
LOC_Os01g68500
Target Sequence 
GTTAGTAACCTTTCATTCCTCATCACTCTGTTCTTCTTGCCGTTCTTGTTGTCCAGTGCGATCAAAGCCGGCCGACGGTG
GCCGGTAGAGGAGGCTGCCGGCCTCCGGTCGCCGCCACGGCGATAATTTTTCGTGGTTATGATGGTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis