Browse Element(s) Details


Os.9880.1.S1_a_at

Description gb:AF022741.1
DB_XREF= gi:2570516
TID=Os.9880.1
CNT=36
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9880 (NCBI UniGene Cluster)
DEF=Oryza sativa thioredoxin F isoform mRNA, complete cds.
PROD=thioredoxin F isoform
FL= gb:AF022741.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6848011/11Thioredoxin F-type 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68430Os.14919.1.S1_at4/111+40093168..40097840transposon protein, putative, Mutator sub-class
LOC_Os01g68430Os.56216.1.S1_at2/111+40093168..40097840transposon protein, putative, Mutator sub-class
LOC_Os01g68440Os.36529.1.S1_at11/111+40099940..40103634expressed protein
LOC_Os01g68450Os.23056.2.S1_x_at11/111+40104637..40106746expressed protein
LOC_Os01g68450Os.23056.1.S1_at11/111+40104637..40106746expressed protein
LOC_Os01g68460OsAffx.11788.1.S1_at11/111+40107632..40110194DC1 domain-containing protein, putative, expressed
LOC_Os01g68470OsAffx.11789.1.S1_s_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.2.S1_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.1.S1_at5/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.16999.1.S1_at1/111+40116502..40118073hypothetical protein
LOC_Os01g68490Os.9880.3.S1_at11/111+40121088..40126190pentatricopeptide, putative, expressed
LOC_Os01g68480Os.9880.1.S1_a_at11/111+40121360..40122658Thioredoxin F-type 2, chloroplast precursor, putative, expressed
LOC_Os01g68500Os.11035.1.S1_at11/111+40128313..40129336expressed protein
LOC_Os01g68510Os.33401.2.S1_x_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68510Os.33401.1.S1_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68524Os.7733.1.S2_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_s_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.7733.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.51807.1.S1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.47816.1.A1_at1/111+40138573..40146404pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000103biological_processsulfate assimilation
GO:0006499biological_processN-terminal protein myristoylation
GO:0005829cellular_componentcytosol
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9880.1.S1_a_at--584--8851Chr01:40121651..40121675 (25 bp)
TGATCCCCGTGAGGTCGAGCGGCTC
LOC_Os01g68480
Os.9880.1.S1_a_at--510--2911Chr01:40121743..40121767 (25 bp)
AAGGATACCTTCTGGCCAATTGTCA
LOC_Os01g68480
Os.9880.1.S1_a_at--703--8711Chr01:40121763..40121787 (25 bp)
TGTCAAGTCGGCAGGGCCCAAGGTC
LOC_Os01g68480
Os.9880.1.S1_a_at--612--9251Chr01:40121792..40121815 (24 bp)
TCCTCGACATGTACACCCAATGGTG
LOC_Os01g68480
Os.9880.1.S1_a_at--456--4551Chr01:40122014..40122038 (25 bp)
GCCCTTGCAAGGTGATGGCACCGAA
LOC_Os01g68480
Os.9880.1.S1_a_at--631--8091Chr01:40122060..40122084 (25 bp)
GGACCAGGACGTTGTGTTCCTCAAA
LOC_Os01g68480
Os.9880.1.S1_a_at--437--6691Chr01:40122075..40122099 (25 bp)
GTTCCTCAAACTCGACTGCAATCAA
LOC_Os01g68480
Os.9880.1.S1_a_at--1126--7911Chr01:40122256..40122280 (25 bp)
GGTTGTGCCAACATTCAAGATTCTC
LOC_Os01g68480
Os.9880.1.S1_a_at--242--8631Chr01:40122417..40122441 (25 bp)
TGGGTGAACCACCAGTTATTGAAGT
LOC_Os01g68480
Os.9880.1.S1_a_at--65--1111Chr01:40122439..40122463 (25 bp)
AGTGGGTATTCGACATGGAGACAAA
LOC_Os01g68480
Os.9880.1.S1_a_at--133--6771Chr01:40122466..40122490 (25 bp)
GTTAATCTAGTTCTTCTGCCTATGA
LOC_Os01g68480
Target Sequence 
TGATCCCCGTGAGGTCGAGCGGCTCGGACACCGCCACTGTTGGGGCCGAGGCGGAGGCGGTGGCCGTGACCGGGCAGGTG
ACGGAGGTGAACAAAGGATACCTTCTGGCCAATTGTCAAGTCGGCAGGGCCCAAGGTCGTCGTCCTCGACATGTACACCC
AATGGTGCGGCCCTTGCAAGGTGATGGCACCGAAATTCCAGGAGATGTCCGAGAAGGACCAGGACGTTGTGTTCCTCAAA
CTCGACTGCAATCAAGACAACAAGTCTCTTGCAAAGGAGCTGGGCATAAAGGTTGTGCCAACATTCAAGATTCTCAAGGA
CGGGAAGGTCGTCAAGGAGGTCACAGGTGCCCAAACTAGATGAATTAATCCAAGCGATCGAGACGGTGAAGTCAAGCTGA
GGAATGCCCTGAAAATTTGCATCAGTTAGCTTGTTGTCACTAGTGTACGTTATGGGTGAACCACCAGTTATTGAAGTGGG
TATTCGACATGGAGACAAACAGTTAATCTAGTTCTTCTGCCTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9880.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis