Browse Element(s) Details


Os.23056.2.S1_x_at

Description gb:NM_189902.1
DB_XREF= gi:34906887
GEN=P0470A12.24
TID=Os.23056.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.24 (P0470A12.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0470A12.24 (P0470A12.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6845011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68410OsAffx.22848.3.S1_x_at3/111+40077743..40083688retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g68420OsAffx.11787.2.S1_at7/111+40089745..40090563hypothetical protein
LOC_Os01g68430Os.14919.1.S1_at4/111+40093168..40097840transposon protein, putative, Mutator sub-class
LOC_Os01g68430Os.56216.1.S1_at2/111+40093168..40097840transposon protein, putative, Mutator sub-class
LOC_Os01g68440Os.36529.1.S1_at11/111+40099940..40103634expressed protein
LOC_Os01g68450Os.23056.2.S1_x_at11/111+40104637..40106746expressed protein
LOC_Os01g68450Os.23056.1.S1_at11/111+40104637..40106746expressed protein
LOC_Os01g68460OsAffx.11788.1.S1_at11/111+40107632..40110194DC1 domain-containing protein, putative, expressed
LOC_Os01g68470OsAffx.11789.1.S1_s_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.2.S1_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.1.S1_at5/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.16999.1.S1_at1/111+40116502..40118073hypothetical protein
LOC_Os01g68490Os.9880.3.S1_at11/111+40121088..40126190pentatricopeptide, putative, expressed
LOC_Os01g68480Os.9880.1.S1_a_at11/111+40121360..40122658Thioredoxin F-type 2, chloroplast precursor, putative, expressed
LOC_Os01g68500Os.11035.1.S1_at11/111+40128313..40129336expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23056.2.S1_x_at--884--1811Chr01:40105081..40105104 (24 bp)
ACGCCGTCTCCGTCAAATACAAGGA
LOC_Os01g68450
Os.23056.2.S1_x_at--520--1311Chr01:40105753..40105776 (24 bp)
AAGGACCCGGTCAGAACATTTGTTG
LOC_Os01g68450
Os.23056.2.S1_x_at--964--31Chr01:40105799..40105823 (25 bp)
ATTGTGGATCACCAAGGCACTCGAA
LOC_Os01g68450
Os.23056.2.S1_x_at--377--3191Chr01:40106134..40106158 (25 bp)
CAATCTTCGCAACCATCGGAGGAGA
LOC_Os01g68450
Os.23056.2.S1_x_at--496--8851Chr01:40106161..40106185 (25 bp)
TGATCGTCTCTGTTACCTCACAGTT
LOC_Os01g68450
Os.23056.2.S1_x_at--1030--2851Chr01:40106209..40106275 (25 bp)
AAGTGCTCGAACAGGCCTACTTTTG
LOC_Os01g68450
Os.23056.2.S1_x_at--820--791Chr01:40106263..40106287 (25 bp)
AGGCCTACTTTTGGTTGTCCAGGAG
LOC_Os01g68450
Os.23056.2.S1_x_at--430--2891Chr01:40106334..40106358 (25 bp)
AAGGGTACAGCATCTCGGCTATCAT
LOC_Os01g68450
Os.23056.2.S1_x_at--161--8031Chr01:40106378..40106402 (25 bp)
GGAGGTTTATCCAGATCCCTCAGGG
LOC_Os01g68450
Os.23056.2.S1_x_at--632--7651Chr01:40106401..40106542 (25 bp)
GGGATCCTACTAAGTTCTTCCAAAG
LOC_Os01g68450
Os.23056.2.S1_x_at--176--6271Chr01:40106565..40106589 (25 bp)
GATGTGTACCAGATTGCGCTTTTCC
LOC_Os01g68450
Target Sequence 
ACGCCGTCTCCGTCAAATACAAGGACCCGGTCAGAACATTTGTTGGACGGGAGAAGTACAAGAGGCCATTGTGGATCACC
AAGGCACTCGAAAACCCTACAGTGACAGTCCAGGAAATGTCAATGCAATCGACAAGCAACCTGACCATCAAATGGACATT
CAGAGGCAAACCTAAGAATCCAATCTTCGCAACCATCGGAGGAGACCTGATCGTCTCTGTTACCTCACAGTTCGTATTGA
ACCAGATTAGCGGCCAAGTGCTCGAACAGGCCTACTTTTGGTTGTCCAGGAGGGCCTTCTCCACTGTTGAAGCCGGAAAG
GACACAATCGAAGCTGCAAAGGGTACAGCATCTCGGCTATCATCAAAGAAAGATGAGAACTTGGAGGTTTATCCAGATCC
CTCAGGGGATCCTACTAAGTTCTTCCAAAGGCCGGATGATGGATTGAACCAAGATGTGTACCAGATTGCGCTTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23056.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis