Browse Element(s) Details


OsAffx.11789.1.S1_at

Description gb:NM_189905.1
DB_XREF= gi:34906893
GEN=P0470A12.27
TID=OsAffx.11789.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0470A12.27 (P0470A12.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g684705/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68430Os.14919.1.S1_at4/111+40093168..40097840transposon protein, putative, Mutator sub-class
LOC_Os01g68430Os.56216.1.S1_at2/111+40093168..40097840transposon protein, putative, Mutator sub-class
LOC_Os01g68440Os.36529.1.S1_at11/111+40099940..40103634expressed protein
LOC_Os01g68450Os.23056.2.S1_x_at11/111+40104637..40106746expressed protein
LOC_Os01g68450Os.23056.1.S1_at11/111+40104637..40106746expressed protein
LOC_Os01g68460OsAffx.11788.1.S1_at11/111+40107632..40110194DC1 domain-containing protein, putative, expressed
LOC_Os01g68470OsAffx.11789.1.S1_s_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.2.S1_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.1.S1_at5/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.16999.1.S1_at1/111+40116502..40118073hypothetical protein
LOC_Os01g68490Os.9880.3.S1_at11/111+40121088..40126190pentatricopeptide, putative, expressed
LOC_Os01g68480Os.9880.1.S1_a_at11/111+40121360..40122658Thioredoxin F-type 2, chloroplast precursor, putative, expressed
LOC_Os01g68500Os.11035.1.S1_at11/111+40128313..40129336expressed protein
LOC_Os01g68510Os.33401.2.S1_x_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68510Os.33401.1.S1_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68524Os.7733.1.S2_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_s_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.7733.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.51807.1.S1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.47816.1.A1_at1/111+40138573..40146404pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11789.1.S1_at--1143--9311Chr01:40117497..40117518 (22 bp)
TCCCAGTTGTGCACGCTTGCAGGTG
LOC_Os01g68470
OsAffx.11789.1.S1_at--108--3451Chr01:40117497..40117521 (25 bp)
CAGTTGTGCACGCTTGCAGGTGAAT
LOC_Os01g68470
OsAffx.11789.1.S1_at--518--10831Chr01:40117500..40117524 (25 bp)
TTGTGCACGCTTGCAGGTGAATGGT
LOC_Os01g68470
OsAffx.11789.1.S1_at--827--7331Chr01:40117502..40117526 (25 bp)
GTGCACGCTTGCAGGTGAATGGTTA
LOC_Os01g68470
OsAffx.11789.1.S1_at--733--3351Chr01:40117505..40117529 (25 bp)
CACGCTTGCAGGTGAATGGTTATGC
LOC_Os01g68470
OsAffx.11789.1.S1_at--327--8731NONE
TGTCATCACCGACCTTCAGGACGTT
NONE
OsAffx.11789.1.S1_at--617--371NONE
ATCACCGACCTTCAGGACGTTGCAG
NONE
OsAffx.11789.1.S1_at--785--9671Chr01:40119609..40119628 (20 bp)
TCACCGACCTTCAGGACGTTGCAGT
NONE
OsAffx.11789.1.S1_at--23--5851Chr01:40119609..40119633 (25 bp)
GACCTTCAGGACGTTGCAGTCCATG
NONE
OsAffx.11789.1.S1_at--932--10531Chr01:40119613..40119637 (25 bp)
TTCAGGACGTTGCAGTCCATGGCGA
NONE
OsAffx.11789.1.S1_at--123--3491Chr01:40119615..40119639 (25 bp)
CAGGACGTTGCAGTCCATGGCGATG
NONE
Target Sequence 
TCCCAGTTGTGCACGCTTGCAGGTGAATGGTTATGCGTACGTGCGGGACATCGGAAGGTTGCGCACCCTGCTCAAACGCG
GCAGGGTCCTGCACCCCTGCTGCGCGGCGCTGCCGAAGGTGATCGAAGCCGAGGGCAGCGTGACGAAGCTGCGGCTCACG
CGGAAGCTCAGGTCGCCGTGCTGCAAGTGCAGGCACGTCAAGCTCGGCGACAGGAGGCACACCTGGGGGTACGTCTCCGA
CGGCGGCGGCGGCGCCGGTGTCGTCCAGATCCATGTCGCCTGCGCCAACGACCTCTTCCGCGAGGAGTACGAGGGCGCGC
GCCTGCAGCAGCAGCAGCGCACAAGGGTGGAAAGGCTCAAGGCGCGTCTGGTGAATATGCTGAGAGGAGCGGCGACCGGC
GGCGGCGGCGGCGTCATGATCCTCCCTCAGCTGCCGACCGGCGTGCCGGAGGAGTCGTCGCCGTCGCCGTGGACGATGGA
CAGCCCGGTCGTGAAAGCGTTGCTGTGGACCATCTGCACCGTTGGTGCTGTCATCACCGACCTTCAGGACGTTGCAGTCC
ATGGCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis