Browse Element(s) Details


Os.9880.3.S1_at

Description gb:AK119446.1
DB_XREF= gi:37989069
TID=Os.9880.3
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.29 (P0470A12.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-D02, full insert sequence.
FL= gb:AK119446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6849011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68430Os.14919.1.S1_at4/111+40093168..40097840transposon protein, putative, Mutator sub-class
LOC_Os01g68430Os.56216.1.S1_at2/111+40093168..40097840transposon protein, putative, Mutator sub-class
LOC_Os01g68440Os.36529.1.S1_at11/111+40099940..40103634expressed protein
LOC_Os01g68450Os.23056.2.S1_x_at11/111+40104637..40106746expressed protein
LOC_Os01g68450Os.23056.1.S1_at11/111+40104637..40106746expressed protein
LOC_Os01g68460OsAffx.11788.1.S1_at11/111+40107632..40110194DC1 domain-containing protein, putative, expressed
LOC_Os01g68470OsAffx.11789.1.S1_s_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.2.S1_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.1.S1_at5/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.16999.1.S1_at1/111+40116502..40118073hypothetical protein
LOC_Os01g68490Os.9880.3.S1_at11/111+40121088..40126190pentatricopeptide, putative, expressed
LOC_Os01g68480Os.9880.1.S1_a_at11/111+40121360..40122658Thioredoxin F-type 2, chloroplast precursor, putative, expressed
LOC_Os01g68500Os.11035.1.S1_at11/111+40128313..40129336expressed protein
LOC_Os01g68510Os.33401.2.S1_x_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68510Os.33401.1.S1_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68524Os.7733.1.S2_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_s_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.7733.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.51807.1.S1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.47816.1.A1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68540Os.8115.1.S1_at11/111+40148884..40150612Rho GDP-dissociation inhibitor 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9880.3.S1_at--894--991Chr01:40121399..40121423 (25 bp)
AGGATGTGCGTTTTTCTTCAGCAGC
LOC_Os01g68490
Os.9880.3.S1_at--716--431Chr01:40121340..40121364 (25 bp)
ATCTTGCATTGCTTGGCGGTATTCA
LOC_Os01g68490
Os.9880.3.S1_at--858--4671Chr01:40121325..40121349 (25 bp)
GCGGTATTCATAGCCTTTCTAGTGG
LOC_Os01g68490
Os.9880.3.S1_at--876--851Chr01:40121274..40121298 (25 bp)
ATGGCTGCCCCAGGTAATTCCTGCA
LOC_Os01g68490
Os.9880.3.S1_at--1146--3151Chr01:40121259..40121283 (25 bp)
AATTCCTGCACTTTTGTGGTGGCAC
LOC_Os01g68490
Os.9880.3.S1_at--519--3371Chr01:40121232..40121256 (25 bp)
CACCTATAGCTTTCTGTGGGATGGG
LOC_Os01g68490
Os.9880.3.S1_at--190--7591Chr01:40121209..40121233 (25 bp)
GGGCATTTCCGGTATCTGAAAGATC
LOC_Os01g68490
Os.9880.3.S1_at--432--8611Chr01:40121176..40121200 (25 bp)
TGGTGCCTGCGCATCTCTGAGGTTT
LOC_Os01g68490
Os.9880.3.S1_at--216--6951Chr01:40121123..40121147 (25 bp)
GTAGATGGCTCTTTGTGTCTGGAAC
LOC_Os01g68490
Os.9880.3.S1_at--984--8711Chr01:40121108..40121132 (25 bp)
TGTCTGGAACTGATGGCCTCACGAT
LOC_Os01g68490
Os.9880.3.S1_at--473--6211Chr01:40121097..40121121 (25 bp)
GATGGCCTCACGATTGACGGTAACA
LOC_Os01g68490
Target Sequence 
AGGATGTGCGTTTTTCTTCAGCAGCGGCAGCGGCAGATGAGTGGTGAGCTTGAAAGGATATCTTGCATTGCTTGGCGGTA
TTCATAGCCTTTCTAGTGGAGATAGTTTCTTGGCGGGGAAATGACATGGCTGCCCCAGGTAATTCCTGCACTTTTGTGGT
GGCACTCCACCTATAGCTTTCTGTGGGATGGGGCATTTCCGGTATCTGAAAGATCGGGTTGTGTGGTGCCTGCGCATCTC
TGAGGTTTCATGGAGGAGAGAGCTTGTCTAACATTTGTAGATGGCTCTTTGTGTCTGGAACTGATGGCCTCACGATTGAC
GGTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9880.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis