Browse Element(s) Details


Os.23056.1.S1_at

Description gb:AK068528.1
DB_XREF= gi:32978546
TID=Os.23056.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.24 (P0470A12.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155P10, full insert sequence.
FL= gb:AK068528.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6845011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68410OsAffx.22848.3.S1_x_at3/111+40077743..40083688retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g68420OsAffx.11787.2.S1_at7/111+40089745..40090563hypothetical protein
LOC_Os01g68430Os.14919.1.S1_at4/111+40093168..40097840transposon protein, putative, Mutator sub-class
LOC_Os01g68430Os.56216.1.S1_at2/111+40093168..40097840transposon protein, putative, Mutator sub-class
LOC_Os01g68440Os.36529.1.S1_at11/111+40099940..40103634expressed protein
LOC_Os01g68450Os.23056.2.S1_x_at11/111+40104637..40106746expressed protein
LOC_Os01g68450Os.23056.1.S1_at11/111+40104637..40106746expressed protein
LOC_Os01g68460OsAffx.11788.1.S1_at11/111+40107632..40110194DC1 domain-containing protein, putative, expressed
LOC_Os01g68470OsAffx.11789.1.S1_s_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.2.S1_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.1.S1_at5/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.16999.1.S1_at1/111+40116502..40118073hypothetical protein
LOC_Os01g68490Os.9880.3.S1_at11/111+40121088..40126190pentatricopeptide, putative, expressed
LOC_Os01g68480Os.9880.1.S1_a_at11/111+40121360..40122658Thioredoxin F-type 2, chloroplast precursor, putative, expressed
LOC_Os01g68500Os.11035.1.S1_at11/111+40128313..40129336expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23056.1.S1_at--1031--2851Chr01:40106209..40106233 (25 bp)
AAGTGCTCGAACAGGTCGACTCATG
LOC_Os01g68450
Os.23056.1.S1_at--72--1451Chr01:40106622..40106646 (25 bp)
AGAACGACTCTGTGATTGTACTAGC
LOC_Os01g68450
Os.23056.1.S1_at--956--5711Chr01:40106627..40106651 (25 bp)
GACTCTGTGATTGTACTAGCTCCCA
LOC_Os01g68450
Os.23056.1.S1_at--775--8671Chr01:40106632..40106656 (25 bp)
TGTGATTGTACTAGCTCCCACAGTC
LOC_Os01g68450
Os.23056.1.S1_at--279--51Chr01:40106636..40106660 (25 bp)
ATTGTACTAGCTCCCACAGTCCCAA
LOC_Os01g68450
Os.23056.1.S1_at--1011--2531Chr01:40106659..40106683 (25 bp)
AACTCAACCTGATACTCTGGCCTGA
LOC_Os01g68450
Os.23056.1.S1_at--382--2631Chr01:40106664..40106688 (25 bp)
AACCTGATACTCTGGCCTGATTCTC
LOC_Os01g68450
Os.23056.1.S1_at--620--6471Chr01:40106669..40106693 (25 bp)
GATACTCTGGCCTGATTCTCCAGGT
LOC_Os01g68450
Os.23056.1.S1_at--116--6571Chr01:40106682..40106706 (25 bp)
GATTCTCCAGGTCAAGCTTTTGTGT
LOC_Os01g68450
Os.23056.1.S1_at--733--3811Chr01:40106686..40106710 (25 bp)
CTCCAGGTCAAGCTTTTGTGTATCA
LOC_Os01g68450
Os.23056.1.S1_at--161--7091Chr01:40106692..40106716 (25 bp)
GTCAAGCTTTTGTGTATCAGTGTAT
LOC_Os01g68450
Target Sequence 
AAGTGCTCGAACAGGTCGACTCATGGGACCTCTCTGCCTCGTCTCCTCCTGCCCAGGCCTACTTTTGGTTGTCCAGGAGG
GCCTTCTCCACTGTTGAAGCCGGAAAGGACACAATCGAAGCTGCAAAGGGTACAGCATCTCGGCTATCATCAAAGAAAGA
TGAGAACTTGGAGGTTTATCCAGATCCCTCAGGGGATCCTACTAAGTTCTTCCAAAGGCCGGATGATGGATTGAACCAAG
ATGTGTACCAGATTGCGCTCTTCCTGGCCGTTCTCTACTTCATTGTACAGTTTTTGAGAACGACTCTGTGATTGTACTAG
CTCCCACAGTCCCAACTCAACCTGATACTCTGGCCTGATTCTCCAGGTCAAGCTTTTGTGTATCAGTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis