Browse Element(s) Details


OsAffx.11787.2.S1_at

Description gb:NM_189900.1
DB_XREF= gi:34906883
GEN=P0470A12.21
TID=OsAffx.11787.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0470A12.21 (P0470A12.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g684207/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68390Os.39982.1.S1_at11/111+40063962..40068555Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g68400NANA1+40069219..40069830hypothetical protein
LOC_Os01g68410OsAffx.22848.3.S1_x_at3/111+40077743..40083688retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g68420OsAffx.11787.2.S1_at7/111+40089745..40090563hypothetical protein
LOC_Os01g68430Os.14919.1.S1_at4/111+40093168..40097840transposon protein, putative, Mutator sub-class
LOC_Os01g68430Os.56216.1.S1_at2/111+40093168..40097840transposon protein, putative, Mutator sub-class
LOC_Os01g68440Os.36529.1.S1_at11/111+40099940..40103634expressed protein
LOC_Os01g68450Os.23056.2.S1_x_at11/111+40104637..40106746expressed protein
LOC_Os01g68450Os.23056.1.S1_at11/111+40104637..40106746expressed protein
LOC_Os01g68460OsAffx.11788.1.S1_at11/111+40107632..40110194DC1 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11787.2.S1_at--983--5751Chr01:40090126..40090150 (25 bp)
GACGTGGAGCTACTGGAGCTTCTCC
LOC_Os01g68420
OsAffx.11787.2.S1_at--646--8531Chr01:40090130..40090154 (25 bp)
TGGAGCTACTGGAGCTTCTCCGATC
LOC_Os01g68420
OsAffx.11787.2.S1_at--479--4511Chr01:40090201..40090225 (25 bp)
GCCGACGAGGCTGAACAAAGTGTCT
LOC_Os01g68420
OsAffx.11787.2.S1_at--330--5511Chr01:40090213..40090237 (25 bp)
GAACAAAGTGTCTCGCTCGAGCGCG
LOC_Os01g68420
OsAffx.11787.2.S1_at--118--2331Chr01:40090217..40090241 (25 bp)
AAAGTGTCTCGCTCGAGCGCGCGCA
LOC_Os01g68420
OsAffx.11787.2.S1_at--204--5771Chr01:40090471..40090495 (25 bp)
GACGACGGCGAAACGGTAGTCTTGC
LOC_Os01g68420
OsAffx.11787.2.S1_at--476--5531Chr01:40090480..40090504 (25 bp)
GAAACGGTAGTCTTGCCGGACGACG
LOC_Os01g68420
OsAffx.11787.2.S1_at--548--7631Chr01:40090663..40090687 (25 bp)
GGGACGATCAGAGCTCGCTGGACTT
NONE
OsAffx.11787.2.S1_at--649--1371Chr01:40090672..40090696 (25 bp)
AGAGCTCGCTGGACTTCTGTGTTGA
NONE
OsAffx.11787.2.S1_at--639--3791Chr01:40090676..40090700 (25 bp)
CTCGCTGGACTTCTGTGTTGATGAA
NONE
OsAffx.11787.2.S1_at--1027--2051Chr01:40090684..40090708 (25 bp)
ACTTCTGTGTTGATGAAATCCTGGA
NONE
Target Sequence 
GACGTGGAGCTACTGGAGCTTCTCCGATCCATCGACGTCTCCCTGGCCGCCGCGAGCGACACGATCCAGAAGGCCGCCGA
CGAGGCTGAACAAAGTGTCTCGCTCGAGCGCGCGCACGCGCACGCTCACGCGGGCGCGCTCATGGTGGACTCCCAGGAGG
ATGCCGCGCCGCCGCCGGCGGCGAGCGGGAACGGCGTCGCGTACGACGGCGAGCACATCAACTTGGGCGGGTACATGATC
GAGCACAACCGATTCGAAGCAATCTGGCGCGAACACGCGATCCCTCCTCCACAAAGCCTCCTGCCGGACGACGACGGCGG
CGAACCGCTGCGGCTGTGGTCGTTCGACGACGGCGAAACGGTAGTCTTGCCGGACGACGACGGCGGCGAACCGCTGCGGC
TGTGGTCGTTCGACGACGGCGAAACGNNANNNANNNNNCCGCTGCGAGGAGGGGACGATCAGAGCTCGCTGGACTTCTGT
GTTGATGAAATCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11787.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis