Browse Element(s) Details


OsAffx.2438.1.S1_s_at

Description tigr:9629.m06806
TID=OsAffx.2438.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6852411/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68470OsAffx.11789.1.S1_s_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.2.S1_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.1.S1_at5/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.16999.1.S1_at1/111+40116502..40118073hypothetical protein
LOC_Os01g68490Os.9880.3.S1_at11/111+40121088..40126190pentatricopeptide, putative, expressed
LOC_Os01g68480Os.9880.1.S1_a_at11/111+40121360..40122658Thioredoxin F-type 2, chloroplast precursor, putative, expressed
LOC_Os01g68500Os.11035.1.S1_at11/111+40128313..40129336expressed protein
LOC_Os01g68510Os.33401.2.S1_x_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68510Os.33401.1.S1_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68524Os.7733.1.S2_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_s_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.7733.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.51807.1.S1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.47816.1.A1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68540Os.8115.1.S1_at11/111+40148884..40150612Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os01g68550Os.35889.1.S1_at7/111+40151802..40153286pentatricopeptide, putative, expressed
LOC_Os01g68560Os.28968.1.S1_at11/111+40153644..40155581expressed protein
LOC_Os01g68560OsAffx.993.1.S1_at1/111+40153644..40155581expressed protein
LOC_Os01g68570Os.33210.2.S1_x_at11/111+40156558..40158304expressed protein
LOC_Os01g68570Os.33210.1.S1_at10/111+40156558..40158304expressed protein
LOC_Os01g68580Os.27932.1.S1_at9/111+40163505..40164101Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68589Os.7317.2.S1_at11/111+40166470..40167291Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2438.1.S1_s_at--215--10411Chr01:40142653..40142677 (25 bp)
TTTTGGGTTTGTGCACTTCTCAAAC
LOC_Os01g68524
OsAffx.2438.1.S1_s_at--453--10251Chr01:40142646..40142670 (25 bp)
TTTGTGCACTTCTCAAACGAGTATG
LOC_Os01g68524
OsAffx.2438.1.S1_s_at--577--1871Chr01:40142630..40142654 (25 bp)
ACGAGTATGAAGCTAAGTGCGCCAA
LOC_Os01g68524
OsAffx.2438.1.S1_s_at--393--9771Chr01:40142617..40142641 (25 bp)
TAAGTGCGCCAAGGATGCTATGGAT
LOC_Os01g68524
OsAffx.2438.1.S1_s_at--448--5551Chr01:40142490..40142511 (22 bp)
GAAAGGTAATGCTAGGACGACCATT
LOC_Os01g68524
OsAffx.2438.1.S1_s_at--603--631Chr01:40142482..40142506 (25 bp)
ATGCTAGGACGACCATTGCGGATAA
LOC_Os01g68524
OsAffx.2438.1.S1_s_at--306--5851Chr01:40142472..40142496 (25 bp)
GACCATTGCGGATAAGTTTTGCTCT
LOC_Os01g68524
OsAffx.2438.1.S1_s_at--954--331Chr01:40142461..40142485 (25 bp)
ATAAGTTTTGCTCTTGACAAGGTCC
LOC_Os01g68524
OsAffx.2438.1.S1_s_at--1078--8951Chr01:40142447..40142471 (25 bp)
TGACAAGGTCCGTGGTGCTCCAGTT
LOC_Os01g68524
OsAffx.2438.1.S1_s_at--111--9111Chr01:40142432..40142456 (25 bp)
TGCTCCAGTTGTTGTTCCACGACTT
LOC_Os01g68524
OsAffx.2438.1.S1_s_at--977--6631Chr01:40142425..40142449 (25 bp)
GTTGTTGTTCCACGACTTTCCACGG
LOC_Os01g68524
Target Sequence 
TTTTGGGTTTGTGCACTTCTCAAACGAGTATGAAGCTAAGTGCGCCAAGGATGCTATGGATGGAAAGGTAATGCTAGGAC
GACCATTGCGGATAAGTTTTGCTCTTGACAAGGTCCGTGGTGCTCCAGTTGTTGTTCCACGACTTTCCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2438.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis