Browse Element(s) Details


Os.7317.2.S1_at

Description gb:AK105463.1
DB_XREF= gi:32990672
TID=Os.7317.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.43 (P0470A12.43), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-126-A01, full insert sequence.
FL= gb:AK103489.1 gb:AK105463.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6858911/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68510Os.33401.2.S1_x_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68510Os.33401.1.S1_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68524Os.7733.1.S2_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_s_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.7733.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.51807.1.S1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.47816.1.A1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68540Os.8115.1.S1_at11/111+40148884..40150612Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os01g68550Os.35889.1.S1_at7/111+40151802..40153286pentatricopeptide, putative, expressed
LOC_Os01g68560Os.28968.1.S1_at11/111+40153644..40155581expressed protein
LOC_Os01g68560OsAffx.993.1.S1_at1/111+40153644..40155581expressed protein
LOC_Os01g68570Os.33210.2.S1_x_at11/111+40156558..40158304expressed protein
LOC_Os01g68570Os.33210.1.S1_at10/111+40156558..40158304expressed protein
LOC_Os01g68580Os.27932.1.S1_at9/111+40163505..40164101Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68589Os.7317.2.S1_at11/111+40166470..40167291Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68598Os.51597.1.S1_at11/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.7296.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.23972.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68610Os.32106.1.S1_at11/111+40176494..40178262pentatricopeptide, putative, expressed
LOC_Os01g68620Os.35017.1.S1_at11/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_x_at9/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_at1/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68630Os.19016.1.S1_at11/111+40184653..40188131expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_x_at11/111+40189019..40189885expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_at11/111+40189019..40189885expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7317.2.S1_at--1111--6571Chr01:40167040..40167064 (25 bp)
GATTGCTAGTAGTGGCCGTGTTATG
LOC_Os01g68589
Os.7317.2.S1_at--921--3991Chr01:40167056..40167080 (25 bp)
CGTGTTATGTCAGGCCATCGTCGCG
LOC_Os01g68589
Os.7317.2.S1_at--249--9351Chr01:40167076..40167100 (25 bp)
TCGCGTCAGCTGGATCTTATTTTGT
LOC_Os01g68589
Os.7317.2.S1_at--1091--1211Chr01:40167116..40167140 (25 bp)
AGTTCACGTTCTGAATGTCGCCAGG
LOC_Os01g68589
Os.7317.2.S1_at--1008--911Chr01:40167138..40167162 (25 bp)
AGGCTAGCTGACATGTGCTCGTGTT
LOC_Os01g68589
Os.7317.2.S1_at--1005--9091Chr01:40167153..40167177 (25 bp)
TGCTCGTGTTGCTCTTGCATATATG
LOC_Os01g68589
Os.7317.2.S1_at--1121--9051Chr01:40167168..40167192 (25 bp)
TGCATATATGCATGGCGCAGTCTGC
LOC_Os01g68589
Os.7317.2.S1_at--933--1151Chr01:40167186..40167210 (25 bp)
AGTCTGCCTGTCTCTATGTATCAAT
LOC_Os01g68589
Os.7317.2.S1_at--583--3071Chr01:40167208..40167232 (25 bp)
AATCTTGTGATTCTCTTGTACGTCA
LOC_Os01g68589
Os.7317.2.S1_at--736--8751Chr01:40167224..40167248 (25 bp)
TGTACGTCATTGCTGTGTGTCTACC
LOC_Os01g68589
Os.7317.2.S1_at--742--7451Chr01:40167240..40167264 (25 bp)
GTGTCTACCTTAATCGTGTTCTCAT
LOC_Os01g68589
Target Sequence 
GATTGCTAGTAGTGGCCGTGTTATGTCAGGCCATCGTCGCGTCAGCTGGATCTTATTTTGTTCTGTTGTTTTGAGTAGTT
CACGTTCTGAATGTCGCCAGGCTAGCTGACATGTGCTCGTGTTGCTCTTGCATATATGCATGGCGCAGTCTGCCTGTCTC
TATGTATCAATCTTGTGATTCTCTTGTACGTCATTGCTGTGTGTCTACCTTAATCGTGTTCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7317.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis