Browse Element(s) Details


Os.27932.1.S1_at

Description gb:BU673074
DB_XREF= gi:23513308
DB_XREF=NL_10_50
CLONE=NL_10_50
TID=Os.27932.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27932 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.42 (P0470A12.42), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g685809/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68510Os.33401.2.S1_x_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68510Os.33401.1.S1_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68524Os.7733.1.S2_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_s_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.7733.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.51807.1.S1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.47816.1.A1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68540Os.8115.1.S1_at11/111+40148884..40150612Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os01g68550Os.35889.1.S1_at7/111+40151802..40153286pentatricopeptide, putative, expressed
LOC_Os01g68560Os.28968.1.S1_at11/111+40153644..40155581expressed protein
LOC_Os01g68560OsAffx.993.1.S1_at1/111+40153644..40155581expressed protein
LOC_Os01g68570Os.33210.2.S1_x_at11/111+40156558..40158304expressed protein
LOC_Os01g68570Os.33210.1.S1_at10/111+40156558..40158304expressed protein
LOC_Os01g68580Os.27932.1.S1_at9/111+40163505..40164101Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68589Os.7317.2.S1_at11/111+40166470..40167291Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68598Os.51597.1.S1_at11/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.7296.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.23972.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68610Os.32106.1.S1_at11/111+40176494..40178262pentatricopeptide, putative, expressed
LOC_Os01g68620Os.35017.1.S1_at11/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_x_at9/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_at1/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68630Os.19016.1.S1_at11/111+40184653..40188131expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_x_at11/111+40189019..40189885expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_at11/111+40189019..40189885expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27932.1.S1_at--54--3711Chr01:40163537..40163561 (25 bp)
CTAGCTACCGCACCAACAGTTAATA
LOC_Os01g68580
Os.27932.1.S1_at--819--2271Chr01:40163551..40163575 (25 bp)
AACAGTTAATAAGACATGGCCGGCG
LOC_Os01g68580
Os.27932.1.S1_at--940--1131Chr01:40163789..40163813 (25 bp)
AGTGCCTGTGCAAGTACCGCGACGA
LOC_Os01g68580
Os.27932.1.S1_at--587--1871Chr01:40163810..40163834 (25 bp)
ACGAGCTGCGGGTCATGGGCAACAT
LOC_Os01g68580
Os.27932.1.S1_at--1120--2851Chr01:40163866..40163890 (25 bp)
AAGTGCCGCATCAAGGGCGCGCCCA
LOC_Os01g68580
Os.27932.1.S1_at--1152--4551Chr01:40163884..40163908 (25 bp)
GCGCCCAAGTCGTGCTAGAGATCTA
LOC_Os01g68580
Os.27932.1.S1_at--766--4851Chr01:40163909..40163933 (25 bp)
GCTAGCTAGCTTCAGTTACGAGCCA
LOC_Os01g68580
Os.27932.1.S1_at--1038--1551Chr01:40163944..40163968 (25 bp)
AGCTAAGCTCCCGACTTAATTAATT
LOC_Os01g68580
Os.27932.1.S1_at--504--7011Chr01:40164001..40164025 (25 bp)
GTACTCAATATTTGCTTCTTGGTTT
LOC_Os01g68580
Os.27932.1.S1_at--971--7871NONE
GGTTTATCACAGTATTTCATTTGGT
NONE
Os.27932.1.S1_at--519--8732Chr06:24014284..24014303 (20 bp)
TGTCAAACTATATATTCCCTCCGTC
NONE
Target Sequence 
CTAGCTACCGCACCAACAGTTAATAAGACATGGCCGGCGGGAAGAAGGCGGCGGTGGCGGTGCTGCTCGTGGTGATGGTG
GTTGTGTCGTTGTCGGCGGTGGCGCCGGCGGCCGCCGCAGGTGCGCCGTTCATGGTGTGTGGCGTGGACGCGGACCGGAT
GGCGGCGGATTGCGGGTCGTACTGCAGGGCCGGGAGCAGGGAGCGGGCGCCGCGGCGGGAGTGCTGCGACGCGGTGAGGG
GCGCCGACTTCAAGTGCCTGTGCAAGTACCGCGACGAGCTGCGGGTCATGGGCAACATCGACGCCGCCCGCGCCATGCAG
ATCCCGTCCAAGTGCCGCATCAAGGGCGCGCCCAAGTCGTGCTAGAGATCTAGCTAGCTAGCTTCAGTTACGAGCCAATA
GCTAGCTAGCTAAGCTCCCGACTTAATTAATTAGTTTCAAATAATCAATGGTCCAGTAAGATTTGTACTCAATATTTGCT
TCTTGGTTTATCACAGTATTTCATTTGGTATTGTCAAACTATATATTCCCTCCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis