Browse Element(s) Details


Os.35889.1.S1_at

Description gb:AK065343.1
DB_XREF= gi:32975361
TID=Os.35889.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.39 (P0470A12.39), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013007P01, full insert sequence.
FL= gb:AK065343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g685507/11pentatricopeptide, putative, expressed
LOC_Os09g064991/11Sulfate transporter 4.1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68500Os.11035.1.S1_at11/111+40128313..40129336expressed protein
LOC_Os01g68510Os.33401.2.S1_x_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68510Os.33401.1.S1_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68524Os.7733.1.S2_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_s_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.7733.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.51807.1.S1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.47816.1.A1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68540Os.8115.1.S1_at11/111+40148884..40150612Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os01g68550Os.35889.1.S1_at7/111+40151802..40153286pentatricopeptide, putative, expressed
LOC_Os01g68560Os.28968.1.S1_at11/111+40153644..40155581expressed protein
LOC_Os01g68560OsAffx.993.1.S1_at1/111+40153644..40155581expressed protein
LOC_Os01g68570Os.33210.2.S1_x_at11/111+40156558..40158304expressed protein
LOC_Os01g68570Os.33210.1.S1_at10/111+40156558..40158304expressed protein
LOC_Os01g68580Os.27932.1.S1_at9/111+40163505..40164101Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68589Os.7317.2.S1_at11/111+40166470..40167291Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68598Os.51597.1.S1_at11/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.7296.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.23972.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68610Os.32106.1.S1_at11/111+40176494..40178262pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35889.1.S1_at--725--691Chr01:40152945..40152969 (25 bp)
ATGAGGGCACTCAGATACCTTGGAA
LOC_Os01g68550
Os.35889.1.S1_at--740--2151Chr01:40152980..40153004 (25 bp)
ACAGCTTGGTTGTGTTACTCGGAAA
LOC_Os01g68550
Os.35889.1.S1_at--234--10511Chr01:40153013..40153037 (25 bp)
TTCAATCTTGATCAGCGGCTTGTGT
LOC_Os01g68550
Os.35889.1.S1_at--146--8651Chr01:40153033..40153057 (25 bp)
TGTGTTCAGAAAGCCGGTTCATCGA
LOC_Os01g68550
Os.35889.1.S1_at--407--7891Chr01:40153048..40153072 (25 bp)
GGTTCATCGACGCAGCACAGATTAT
LOC_Os01g68550
Os.35889.1.S1_at--361--731Chr01:40153216..40153240 (25 bp)
ATGTTTGGTCTTCTTTGGTTTCAGC
LOC_Os01g68550
Os.35889.1.S1_at--955--8051Chr01:40153254..40153278 (25 bp)
GGAGAAGGCCTTACAACTGCTGCTA
LOC_Os01g68550
Os.35889.1.S1_at--13--1991Chr01:40153269..40153293 (25 bp)
ACTGCTGCTACGCATTAAGTGGGAT
NONE
Os.35889.1.S1_at--752--7652Chr09:3073400..3073530 (25 bp)
GGGATTGGGCCAAGTACATTCTTTA
LOC_Os09g06499
Os.35889.1.S1_at--23--2411Chr01:40153321..40153345 (25 bp)
AAACATCACTGGTTTGAGCGTACAG
NONE
Os.35889.1.S1_at--984--5871Chr01:40153336..40153360 (25 bp)
GAGCGTACAGAATTAGCCTCTTTTG
NONE
Target Sequence 
ATGAGGGCACTCAGATACCTTGGAAGGATGGATAAACAGCTTGGTTGTGTTACTCGGAAAGAGACATTTTCAATCTTGAT
CAGCGGCTTGTGTTCAGAAAGCCGGTTCATCGACGCAGCACAGATTATGGAGAGGATGGTTAAGGGTCATCATAGACCTG
AGGCAGGCGAATTTAACAATGTCATTGAAGGTTTATGTTCTGCTGGTAGAACATATGATGCATTGCTATGGCTTGAGGAG
ATGATCGACCATGGAGAAACACCTGATGTTCATGTTTGGTCTTCTTTGGTTTCAGCAGCTTTAGGATTAGGAGAAGGCCT
TACAACTGCTGCTACGCATTAAGTGGGATTGGGCCAAGTACATTCTTTAAGCACAAAAACATCACTGGTTTGAGCGTACA
GAATTAGCCTCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis