Browse Element(s) Details


Os.8115.1.S1_at

Description gb:AK071735.1
DB_XREF= gi:32981758
TID=Os.8115.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Rho GDP-dissociation inhibitor (P0470A12.38), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112G04, full insert sequence.
FL= gb:AK071735.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6854011/11Rho GDP-dissociation inhibitor 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68490Os.9880.3.S1_at11/111+40121088..40126190pentatricopeptide, putative, expressed
LOC_Os01g68500Os.11035.1.S1_at11/111+40128313..40129336expressed protein
LOC_Os01g68510Os.33401.2.S1_x_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68510Os.33401.1.S1_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68524Os.7733.1.S2_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_s_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.7733.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.51807.1.S1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.47816.1.A1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68540Os.8115.1.S1_at11/111+40148884..40150612Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os01g68550Os.35889.1.S1_at7/111+40151802..40153286pentatricopeptide, putative, expressed
LOC_Os01g68560Os.28968.1.S1_at11/111+40153644..40155581expressed protein
LOC_Os01g68560OsAffx.993.1.S1_at1/111+40153644..40155581expressed protein
LOC_Os01g68570Os.33210.2.S1_x_at11/111+40156558..40158304expressed protein
LOC_Os01g68570Os.33210.1.S1_at10/111+40156558..40158304expressed protein
LOC_Os01g68580Os.27932.1.S1_at9/111+40163505..40164101Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68589Os.7317.2.S1_at11/111+40166470..40167291Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68598Os.51597.1.S1_at11/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.7296.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.23972.1.S1_at1/111+40172240..40173476expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0005094molecular_functionRho GDP-dissociation inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8115.1.S1_at--773--4351Chr01:40149456..40149480 (25 bp)
CCAGCTAGAGCCCTACACATATGAG
LOC_Os01g68540
Os.8115.1.S1_at--832--3911Chr01:40149409..40149433 (25 bp)
CTGGCATGTTCGCAAGAGGTTCCTA
LOC_Os01g68540
Os.8115.1.S1_at--53--6131Chr01:40149394..40149418 (25 bp)
GAGGTTCCTATTCTGCTAAACTAAA
LOC_Os01g68540
Os.8115.1.S1_at--275--8031Chr01:40149221..40149245 (25 bp)
GGAGTGGCCAACCATCCAATGATGT
LOC_Os01g68540
Os.8115.1.S1_at--780--9991Chr01:40149165..40149189 (25 bp)
TAGCTGCTAGCTAAGCCAAGTCAGA
LOC_Os01g68540
Os.8115.1.S1_at--722--3431Chr01:40149144..40149168 (25 bp)
CAGATGCGCTGTTGCTTCTAGAAAT
LOC_Os01g68540
Os.8115.1.S1_at--855--4271Chr01:40149042..40149066 (25 bp)
CCTGTTCTTCGGTCGCATAATGTTT
LOC_Os01g68540
Os.8115.1.S1_at--272--3771Chr01:40148995..40149019 (25 bp)
CTCTATACATGGAGACGCGCTGATA
LOC_Os01g68540
Os.8115.1.S1_at--779--9471Chr01:40148949..40148973 (25 bp)
TCTGTTGTTTACTTGTTTGCCTGAA
LOC_Os01g68540
Os.8115.1.S1_at--473--2411Chr01:40148926..40148950 (25 bp)
AAACACACCAGCTGATCAATTCCTT
LOC_Os01g68540
Os.8115.1.S1_at--586--10811Chr01:40148886..40148910 (25 bp)
TTGTCCTAGACATGCACTTTCAGAT
LOC_Os01g68540
Target Sequence 
CCAGCTAGAGCCCTACACATATGAGGGTGAAGAGGAGACCACCCCAGCTGGCATGTTCGCAAGAGGTTCCTATTCTGCTA
AACTAAAGTTTGTTGATGATGATGGCAAATGCTACTTGGAGATGAGTTACTACTTTGAGATTAGGAAGGAGTGGCCAACC
ATCCAATGATGTGTGGAACTAAAAAAGGGCTTCAGAAACATGTTAGCTGCTAGCTAAGCCAAGTCAGATGCGCTGTTGCT
TCTAGAAATGATTCAATGTGNCGTCATCGTTAAACGCCTTTTAATTTGTTTTGAGCTTGTCACACTTTCTTTTTTCTCTT
TTTCTTCCTGTTCTTCGGTCGCATAATGTTTATTCAAACCTATATAATCGATTCTCTATACATGGAGACGCGCTGATATA
TATTTATGTACTACTGAATTCTGTTGTTTACTTGTTTGCCTGAAACACACCAGCTGATCAATTCCTTTGAGCTAATGATT
AATTGTCCTAGACATGCACTTTCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis