Browse Element(s) Details


Os.33401.2.S1_x_at

Description gb:NM_189912.1
DB_XREF= gi:34906907
GEN=P0470A12.34
TID=Os.33401.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33401 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative peptide transporter (P0470A12.34), mRNA.
PROD=putative peptide transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6851011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68470OsAffx.11789.1.S1_s_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.2.S1_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.1.S1_at5/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.16999.1.S1_at1/111+40116502..40118073hypothetical protein
LOC_Os01g68490Os.9880.3.S1_at11/111+40121088..40126190pentatricopeptide, putative, expressed
LOC_Os01g68480Os.9880.1.S1_a_at11/111+40121360..40122658Thioredoxin F-type 2, chloroplast precursor, putative, expressed
LOC_Os01g68500Os.11035.1.S1_at11/111+40128313..40129336expressed protein
LOC_Os01g68510Os.33401.2.S1_x_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68510Os.33401.1.S1_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68524Os.7733.1.S2_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_s_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.7733.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.51807.1.S1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.47816.1.A1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68540Os.8115.1.S1_at11/111+40148884..40150612Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os01g68550Os.35889.1.S1_at7/111+40151802..40153286pentatricopeptide, putative, expressed
LOC_Os01g68560Os.28968.1.S1_at11/111+40153644..40155581expressed protein
LOC_Os01g68560OsAffx.993.1.S1_at1/111+40153644..40155581expressed protein
LOC_Os01g68570Os.33210.2.S1_x_at11/111+40156558..40158304expressed protein
LOC_Os01g68570Os.33210.1.S1_at10/111+40156558..40158304expressed protein
LOC_Os01g68580Os.27932.1.S1_at9/111+40163505..40164101Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68589Os.7317.2.S1_at11/111+40166470..40167291Protease inhibitor/seed storage/LTP family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33401.2.S1_x_at--766--10171Chr01:40141198..40141222 (25 bp)
TATAGGATTGGCCATTTCTCCCATT
LOC_Os01g68510
Os.33401.2.S1_x_at--519--6171Chr01:40141255..40141279 (25 bp)
GAGGAGGAACTCAGCCTTGTCGAAT
LOC_Os01g68510
Os.33401.2.S1_x_at--276--5231Chr01:40141284..40141308 (25 bp)
GAATATCGCCTATGTCAGTCTTGTG
LOC_Os01g68510
Os.33401.2.S1_x_at--65--4931Chr01:40141309..40141333 (25 bp)
GCTTGCACCCCAACTTGTTTTAATG
LOC_Os01g68510
Os.33401.2.S1_x_at--300--6231Chr01:40141343..40141367 (25 bp)
GAGGCCTTCAATGCAGTTGGACAAA
LOC_Os01g68510
Os.33401.2.S1_x_at--61--1011Chr01:40141414..40141438 (25 bp)
AGGATCTCTGTTCTTCTGTACTATA
LOC_Os01g68510
Os.33401.2.S1_x_at--659--2391Chr01:40141447..40141471 (25 bp)
AAACTACCTGAGTACTGCTCTGGCA
LOC_Os01g68510
Os.33401.2.S1_x_at--487--1311Chr01:40141498..40141522 (25 bp)
AGATGGTCACTCAAGCTGGTTAACA
LOC_Os01g68510
Os.33401.2.S1_x_at--487--2051Chr01:40141554..40141578 (25 bp)
ACTTCTATTTTATTGCCCTTATGGG
LOC_Os01g68510
Os.33401.2.S1_x_at--185--791Chr01:40141574..40141598 (25 bp)
ATGGGAGTCCTGAACCTTATTTATT
LOC_Os01g68510
Os.33401.2.S1_x_at--1032--9551Chr01:40141600..40141624 (25 bp)
TCTTATATGCTCACACTTCTACCAA
LOC_Os01g68510
Target Sequence 
TATAGGATTGGCCATTTCTCCCATTTCAATGGTGGTAGCAGGACTTGTCGAACGTAAGAGGAGGAACTCAGCCTTGTCGA
ATGGAGGAATATCGCCTATGTCAGTCTTGTGGCTTGCACCCCAACTTGTTTTAATGGGTATTGCTGAGGCCTTCAATGCA
GTTGGACAAATAGAATTCTACAATAAGCAGTTTCCAGAGAACATGCAAACCCTAGCAGGATCTCTGTTCTTCTGTACTAT
AGCTGGAGCAAACTACCTGAGTACTGCTCTGGCAAACATCATGAGAAAGGTCACGACCAGAGATGGTCACTCAAGCTGGT
TAACAGACAACATTAATCTTGGCAAACTCGACTATTACTTCTATTTTATTGCCCTTATGGGAGTCCTGAACCTTATTTAT
TTTCTTATATGCTCACACTTCTACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33401.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis