Browse Element(s) Details


OsAffx.2438.1.S1_at

Description tigr:9629.m06806
TID=OsAffx.2438.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6852411/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68470OsAffx.11789.1.S1_s_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.2.S1_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.1.S1_at5/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.16999.1.S1_at1/111+40116502..40118073hypothetical protein
LOC_Os01g68490Os.9880.3.S1_at11/111+40121088..40126190pentatricopeptide, putative, expressed
LOC_Os01g68480Os.9880.1.S1_a_at11/111+40121360..40122658Thioredoxin F-type 2, chloroplast precursor, putative, expressed
LOC_Os01g68500Os.11035.1.S1_at11/111+40128313..40129336expressed protein
LOC_Os01g68510Os.33401.2.S1_x_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68510Os.33401.1.S1_at11/111+40137156..40142055POT family protein, expressed
LOC_Os01g68524Os.7733.1.S2_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_s_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.7733.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524OsAffx.2438.1.S1_at11/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.51807.1.S1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68524Os.47816.1.A1_at1/111+40138573..40146404pentatricopeptide, putative, expressed
LOC_Os01g68540Os.8115.1.S1_at11/111+40148884..40150612Rho GDP-dissociation inhibitor 1, putative, expressed
LOC_Os01g68550Os.35889.1.S1_at7/111+40151802..40153286pentatricopeptide, putative, expressed
LOC_Os01g68560Os.28968.1.S1_at11/111+40153644..40155581expressed protein
LOC_Os01g68560OsAffx.993.1.S1_at1/111+40153644..40155581expressed protein
LOC_Os01g68570Os.33210.2.S1_x_at11/111+40156558..40158304expressed protein
LOC_Os01g68570Os.33210.1.S1_at10/111+40156558..40158304expressed protein
LOC_Os01g68580Os.27932.1.S1_at9/111+40163505..40164101Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68589Os.7317.2.S1_at11/111+40166470..40167291Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2438.1.S1_at--566--10411Chr01:40142867..40142891 (25 bp)
TTATCTGGTGGAGGCATATTGGTGT
LOC_Os01g68524
OsAffx.2438.1.S1_at--95--6211Chr01:40142858..40142881 (24 bp)
GAGGCATATTGGTGTTTGCCTGGTC
LOC_Os01g68524
OsAffx.2438.1.S1_at--205--931Chr01:40142858..40142880 (23 bp)
AGGCATATTGGTGTTTGCCTGGTCA
LOC_Os01g68524
OsAffx.2438.1.S1_at--18--8291Chr01:40142858..40142879 (22 bp)
GGCATATTGGTGTTTGCCTGGTCAA
LOC_Os01g68524
OsAffx.2438.1.S1_at--790--4951Chr01:40142858..40142878 (21 bp)
GCATATTGGTGTTTGCCTGGTCAAG
LOC_Os01g68524
OsAffx.2438.1.S1_at--1019--3571Chr01:40142680..40142877 (25 bp)
CATATTGGTGTTTGCCTGGTCAAGA
LOC_Os01g68524
OsAffx.2438.1.S1_at--189--231Chr01:40142679..40142876 (25 bp)
ATATTGGTGTTTGCCTGGTCAAGAG
LOC_Os01g68524
OsAffx.2438.1.S1_at--951--10811Chr01:40142676..40142873 (25 bp)
TTGGTGTTTGCCTGGTCAAGAGGTT
LOC_Os01g68524
OsAffx.2438.1.S1_at--772--8611Chr01:40142675..40142872 (25 bp)
TGGTGTTTGCCTGGTCAAGAGGTTT
LOC_Os01g68524
OsAffx.2438.1.S1_at--249--7751Chr01:40142674..40142871 (25 bp)
GGTGTTTGCCTGGTCAAGAGGTTTT
LOC_Os01g68524
OsAffx.2438.1.S1_at--265--7431Chr01:40142673..40142870 (25 bp)
GTGTTTGCCTGGTCAAGAGGTTTTG
LOC_Os01g68524
Target Sequence 
TTATCTGGTGGAGGCATATTGGTGTTTGCCTGGTCAAGAGGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis