Browse Element(s) Details


Os.32106.1.S1_at

Description gb:AK106012.1
DB_XREF= gi:32991221
TID=Os.32106.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) selenium-binding protein-like (P0004D12.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B03, full insert sequence.
FL= gb:AK106012.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6861011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68550Os.35889.1.S1_at7/111+40151802..40153286pentatricopeptide, putative, expressed
LOC_Os01g68560Os.28968.1.S1_at11/111+40153644..40155581expressed protein
LOC_Os01g68560OsAffx.993.1.S1_at1/111+40153644..40155581expressed protein
LOC_Os01g68570Os.33210.2.S1_x_at11/111+40156558..40158304expressed protein
LOC_Os01g68570Os.33210.1.S1_at10/111+40156558..40158304expressed protein
LOC_Os01g68580Os.27932.1.S1_at9/111+40163505..40164101Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68589Os.7317.2.S1_at11/111+40166470..40167291Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g68598Os.51597.1.S1_at11/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.7296.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68598OsAffx.23972.1.S1_at1/111+40172240..40173476expressed protein
LOC_Os01g68610Os.32106.1.S1_at11/111+40176494..40178262pentatricopeptide, putative, expressed
LOC_Os01g68620Os.35017.1.S1_at11/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_x_at9/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_at1/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68630Os.19016.1.S1_at11/111+40184653..40188131expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_x_at11/111+40189019..40189885expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_at11/111+40189019..40189885expressed protein
LOC_Os01g68650Os.27232.1.S1_at11/111+40193187..40194309uncharacterized plant-specific domain TIGR01615 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32106.1.S1_at--584--10771Chr01:40177064..40177088 (25 bp)
TTGATGCCATCAAGCTTTTTAACCA
LOC_Os01g68610
Os.32106.1.S1_at--509--9891Chr01:40177001..40177025 (25 bp)
TACTTGCTGTGTTGACTTCTTGCAC
LOC_Os01g68610
Os.32106.1.S1_at--635--2051Chr01:40176987..40177011 (25 bp)
ACTTCTTGCACGCATGCTGGGTTAG
LOC_Os01g68610
Os.32106.1.S1_at--873--9471Chr01:40176877..40176901 (25 bp)
TCTCCTTGGCCGTGCTGGACGAGTG
LOC_Os01g68610
Os.32106.1.S1_at--174--3031Chr01:40176826..40176850 (25 bp)
AATGCCGATGGAACCGACTCCTGAA
LOC_Os01g68610
Os.32106.1.S1_at--1044--3631Chr01:40176782..40176806 (25 bp)
CTTCCTGCCGAAGCCATAGGTGTGT
LOC_Os01g68610
Os.32106.1.S1_at--268--1571Chr01:40176746..40176770 (25 bp)
AGCTATCAGTTGAGCGTCTGGCCAG
LOC_Os01g68610
Os.32106.1.S1_at--302--7191Chr01:40176731..40176755 (25 bp)
GTCTGGCCAGTCTCGGAGCAGATGA
LOC_Os01g68610
Os.32106.1.S1_at--425--8031Chr01:40176702..40176726 (25 bp)
GGAGTCTATGTTCTTCTGTCCAATA
LOC_Os01g68610
Os.32106.1.S1_at--880--6731Chr01:40176693..40176717 (25 bp)
GTTCTTCTGTCCAATATCTATGCTG
LOC_Os01g68610
Os.32106.1.S1_at--302--8151Chr01:40176523..40176547 (25 bp)
GGAAATTTACTTGACGCTGTGGAAT
LOC_Os01g68610
Target Sequence 
TTGATGCCATCAAGCTTTTTAACCAAATGGAAACTGAAAGGGCACCAATGGATGATCTTAGCATACTTGCTGTGTTGACT
TCTTGCACGCATGCTGGGTTAGTCTCAGAGGGTTTGGGGATATTTTANAGAATGGAGAAGGATTTAGGACTAGAACCTAA
GGTGGAACATTATGGTGCATTGATTGATCTCCTTGGCCGTGCTGGACGAGTGGATCAGGCTAGAAACACAATAGAGACAA
TGCCGATGGAACCGACTCCTGAATTATGGGGATCTCTTCTTGCTTCCTGCCGAAGCCATAGGTGTGTGGAGCTGGCTGAG
CTATCAGTTGAGCGTCTGGCCAGTCTCGGAGCAGATGACTCTGGAGTCTATGTTCTTCTGTCCAATATCTATGCTGATGA
AGGAATGTGGGATGATGTTTTCAGGATTAGGAAGTTGATGAGTGCTGAGGGTATGAAAAAGAACATTGGACGGAGTGTGA
TTGAGGTGGATGGACAAATTCATGAGTTTGTGAATGGAGGTAGTTCACATCCCCACAAGGAGGAAATTTACTTGACGCTG
TGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis